Author details

Full Name

James E Bruce

Affiliation

ORCID

Career Start Year

1992

Papers

136

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37307416	Studying Protein-Ligand Interactions by Protein Denaturation and Quantitative Cross-Linking Mass Spectrometry.		2023
37580843	A planar quadrupole device for transmitting and trapping ions in high vacuum.		2023
37398466	Integrated Analysis of Cross-Links and Dead-End Peptides for Enhanced Interpretation of Quantitative XL-MS.		2023
37118428	Skeletal muscle mitochondrial interactome remodeling is linked to functional decline in aged female mice.		2023
36690744	Towards a structurally resolved human protein interaction network.	Nat Struct Mol Biol	2023
35285725	CsrA-Controlled Proteins Reveal New Dimensions of Acinetobacter baumannii Desiccation Tolerance.	Journal of Bacteriology	2022
35594376	Improved Interpretation of Protein Conformational Differences and Ligand Occupancy in Large-Scale Cross-Link Data.	Journal of Proteome Research	2022
35575090	Upregulation of mitochondrial ATPase inhibitory factor 1 (ATPIF1) mediates increased glycolysis in mouse hearts.	Journal of Clinical Investigation	2022
35609787	Differential Proteome and Interactome Analysis Reveal the Basis of Pleiotropy Associated With the Histidine Methyltransferase Hpm1p.	Mol Cell Proteomics	2022
36405497	Mitochondrial interactome quantitation reveals structural changes in metabolic machinery in the failing murine heart.		2022
36538878	Coordinate Regulation of Ribosome and tRNA Biogenesis Controls Hypoxic Injury and Translation.		2022
34232610	In-Cell Labeling and Mass Spectrometry for Systems-Level Structural Biology.	Chemical Reviews	2022
33289940	Applications and advancements of FT-ICR-MS for interactome studies.	Mass Spectrometry Reviews	2022
34393043	Quantitative interactome analysis with chemical cross-linking and mass spectrometry.	Current Opinion in Chemical Biology	2022
34882395	Multiplexed Cross-Linking with Isobaric Quantitative Protein Interaction Reporter Technology.	Analytical Chemistry	2021
34017973	Deciphering the architecture and interactome of hnRNP proteins and enigmRBPs.	Molecular Omics	2021
33897275	Application of frequency multiple FT-ICR-MS signal acquisition for improved proteome research.	International Journal of Mass Spectrometry	2021
33554956	Acetylation of muscle creatine kinase negatively impacts high-energy phosphotransfer in heart failure.	JCI insight	2021
33594738	Crosslinking mass spectrometry: A link between structural biology and systems biology.	Protein Science	2021
33263396	Leveraging the Entirety of the Protein Data Bank to Enable Improved Structure Prediction Based on Cross-Link Data.	Journal of Proteome Research	2021
32554501	Mitochondrial protein interaction landscape of SS-31.	Proceedings of the National Academy of Sciences of the United States of America	2020
31967815	Parallel Detection of Fundamental and Sixth Harmonic Signals Using an ICR Cell with Dipole and Sixth Harmonic Detectors.	Journal of the American Society for Mass Spectrometry	2020
31885275	Longitudinal Transcriptomic, Proteomic, and Metabolomic Analyses of <i>Citrus sinensis</i> (L.) Osbeck Graft-Inoculated with "<i>Candidatus</i> Liberibacter asiaticus".	J Proteome Res	2020
32338516	Longitudinal Transcriptomic, Proteomic, and Metabolomic Analysis of <i>Citrus limon</i> Response to Graft Inoculation by <i>Candidatus Liberibacter asiaticus</i>.	J Proteome Res	2020
32031408	In Vivo Cross-Linking MS Reveals Conservation in OmpA Linkage to Different Classes of Î²-Lactamase Enzymes.	J Am Soc Mass Spectrom	2020
32969639	Isobaric Quantitative Protein Interaction Reporter Technology for Comparative Interactome Studies.	Analytical Chemistry	2020
31045356	First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.	Anal Chem	2019
31747606	Cellular Interactome Dynamics during Paclitaxel Treatment.	Cell Reports	2019
30172868	Chemical cross-linking with mass spectrometry: a tool for systems structural biology.	Current Opinion in Chemical Biology	2019
30137231	Increased sensitivity with automated validation of XL-MS cleavable peptide crosslinks.		2019
30520642	Tools for 3D Interactome Visualization.	J Proteome Res	2019
31270507	Systems structural biology measurements by in vivo cross-linking with mass spectrometry.		2019
31267744	Prediction of an Upper Limit for the Fraction of Interprotein Cross-Links in Large-Scale In Vivo Cross-Linking Studies.	Journal of Proteome Research	2019
31060355	In Vivo Proteome of Pseudomonas aeruginosa in Airways of Cystic Fibrosis Patients.	J Proteome Res	2019
31189925	Hsp90 middle domain phosphorylation initiates a complex conformational program to recruit the ATPase-stimulating cochaperone Aha1.	Nature Communications	2019
29676898	Mango: A General Tool for Collision Induced Dissociation-Cleavable Cross-Linked Peptide Identification.	Anal Chem	2018
29934502	Precision therapeutic targeting of human cancer cell motility.	Nat Commun	2018
30403991	Elusive Conformational Dynamics of PPARÎ³ Inactivation Tied Down by Chemical Cross-Linking.	Structure	2018
29665372	Integrating Cross-Linking Experiments with Ab Initio Protein-Protein Docking.	J Mol Biol	2018
29691781	Characterization of Harmonic Signal Acquisition with Parallel Dipole and Multipole Detectors.	Journal of the American Society for Mass Spectrometry	2018
29199018	Chemical Crosslinking Mass Spectrometry Analysis of Protein Conformations and Supercomplexes in Heart Tissue.	Cell Systems	2018
29731686	Parallel detection in a single ICR cell: Spectral averaging and improved S/N without increased acquisition time.	International Journal of Mass Spectrometry	2018
28130547	Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry.	Proc Natl Acad Sci U S A	2017
28644434	Ageing and hypoxia cause protein aggregation in mitochondria.	Cell Death and Differentiation	2017
28502641	Insights in luteovirid structural biology guided by chemical cross-linking and high resolution mass spectrometry.	Virus Research	2017
28967377	Intrinsic disorder within AKAP79 fine-tunes anchored phosphatase activity toward substrates and drug sensitivity.	Elife	2017
28222269	Restoring Cystic Fibrosis Transmembrane Conductance Regulator Function Reduces Airway Bacteria and Inflammation in People with Cystic Fibrosis and Chronic Lung Infections.	American Journal of Respiratory and Critical Care Medicine	2017
28058592	Parallel Spectral Acquisition with Orthogonal ICR Cells.	Journal of the American Society for Mass Spectrometry	2017
28152603	Large-Scale and Targeted Quantitative Cross-Linking MS Using Isotope-Labeled Protein Interaction Reporter (PIR) Cross-Linkers.	J Proteome Res	2017
27489254	Normalization of NAD+ Redox Balance as a Therapy for Heart Failure.	Circulation	2016