Author details

Full Name

Masaaki Sugiyama

Affiliation

Institute for Integrated Radiation and Nuclear Science, Kyoto University

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36347766	Efficient Multiple Domain Ligation for Proteins Using Asparaginyl Endopeptidase by Selection of Appropriate Ligation Sites Based on Steric Hindrance.	Angew Chem Int Ed Engl	2023
37805066	Structural and Dynamic Changes of Nucleosome upon GATA3 Binding.	J Mol Biol	2023
37419501	Characterization of K-binding factor involved in water-soluble complex of menaquinone-7 produced by Bacillus subtilis natto.	J Biochem	2023
37284265	Derivation of the small-angle scattering profile of a target biomacromolecule from a profile deteriorated by aggregates. AUC-SAS.	J Appl Crystallogr	2023
35273347	Overall structure of fully assembled cyanobacterial KaiABC circadian clock complex by an integrated experimental-computational approach.	Commun Biol	2022
35807211	Pathway Dependence of the Formation and Development of Prefibrillar Aggregates in Insulin B Chain.	Molecules	2022
35705644	Extracting time series matching a small-angle X-ray scattering profile from trajectories of molecular dynamics simulations.	Sci Rep	2022
35629343	Data Collection for Dilute Protein Solutions via a Neutron Backscattering Spectrometer.	Life (Basel)	2022
36534755	Tracking the Structural Development of Amyloid Precursors in the Insulin B Chain and the Inhibition Effect by Fibrinogen.	J Phys Chem B	2022
33954079	Deuteration Aiming for Neutron Scattering.	Biophys Physicobiol	2021
33510404	Elucidation of the mechanism of subunit exchange in Î±B crystallin oligomers.	Sci Rep	2021
33707747	Solution structure of multi-domain protein ER-60 studied by aggregation-free SAXS and coarse-grained-MD simulation.	Sci Rep	2021
33585933	A feasibility study of inverse contrast-matching small-angle neutron scattering method combined with size exclusion chromatography using antibody interactions as model systems.	J Biochem	2021
33580188	Histone variant H2A.B-H2B dimers are spontaneously exchanged with canonical H2A-H2B in the nucleosome.	Commun Biol	2021
34639138	Oligomeric Structural Transition of HspB1 from Chinese Hamster.	Int J Mol Sci	2021
34489423	C9orf72-derived arginine-rich poly-dipeptides impede phase modifiers.	Nat Commun	2021
32458972	A novel soybean protein disulphide isomerase family protein possesses dithiol oxidation activity: identification and characterization of GmPDIL6.	J Biochem	2020
32001743	Supramolecular tholos-like architecture constituted by archaeal proteins without functional annotation.	Sci Rep	2020
31952809	Structural Studies of Overlapping Dinucleosomes in Solution.	Biophys J	2020
33303822	Dynamics of proteins with different molecular structures under solution condition.	Sci Rep	2020
33207549	PV1 Protein from <i>Plasmodium falciparum</i> Exhibits Chaperone-Like Functions and Cooperates with Hsp100s.	Int J Mol Sci	2020
32442520	Asp isomerization increases aggregation of Î±-crystallin and decreases its chaperone activity in human lens of various ages.	Biochim Biophys Acta Proteins Proteom	2020
32513995	Integral approach to biomacromolecular structure by analytical-ultracentrifugation and small-angle scattering.	Commun Biol	2020
31135143	Structural Insights into the Inhibition of Amyloid Fibril Formation by Fibrinogen via Interaction with Prefibrillar Intermediates.	Biochemistry	2019
31471544	Newly developed Laboratory-based Size exclusion chromatography Small-angle x-ray scattering System (La-SSS).	Sci Rep	2019
31544845	Dynamic Views of the Fc Region of Immunoglobulin G Provided by Experimental and Computational Observations.	Antibodies (Basel)	2019
29301037	Conversion of functionally undefined homopentameric protein PbaA into a proteasome activator by mutational modification of its C-terminal segment conformation.	Protein Eng Des Sel	2018
30077335	Direct Evidence for the Effect of Glycerol on Protein Hydration and Thermal Structural Transition.	Biophys J	2018
30021107	Direct Evidence for the Effect of Glycerol on Protein Hydration and Thermal Structural Transition.	Biophys J	2018
29444565	Elucidating the Solvent Effect on the Switch of the Helicity of Poly(quinoxaline-2,3-diyl)s: A Conformational Analysis by Small-Angle Neutron Scattering.	J Am Chem Soc	2018
29676852	Asp 58 modulates lens Î±A-crystallin oligomer formation and chaperone function.	FEBS J	2018
29107147	Solution scattering approaches to dynamical ordering in biomolecular systems.	Biochim Biophys Acta Gen Subj	2018
29204878	Gliadins from wheat grain: an overview, from primary structure to nanostructures of aggregates.	Biophys Rev	2018
28876235	2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update.	Acta Crystallogr D Struct Biol	2017
28408607	Crystal structure of the overlapping dinucleosome composed of hexasome and octasome.	Science	2017
28955785	Characterization of conformational deformation-coupled interaction between immunoglobulin G1 Fc glycoprotein and a low-affinity FcÎ³ receptor by deuteration-assisted small-angle neutron scattering.	Biochem Biophys Rep	2017
28857320	Identification of heteromolecular binding sites in transcription factors Sp1 and TAF4 using high-resolution nuclear magnetic resonance spectroscopy.	Protein Sci	2017
27515574	Interaction between intrinsically disordered regions in transcription factors Sp1 and TAF4.	Protein Sci	2016
27738416	Magnetic scattering in the simultaneous measurement of small-angle neutron scattering and Bragg edge transmission from steel.	J Appl Crystallogr	2016
27752127	Structural characterization of the circadian clock protein complex composed of KaiB and KaiC by inverse contrast-matching small-angle neutron scattering.	Sci Rep	2016
27381175	New insight into the dynamical system of Î±B-crystallin oligomers.	Sci Rep	2016
26166249	Corrigendum: Structural basis of a nucleosome containing histone H2A.B/H2A.Bbd that transiently associates with reorganized chromatin.	Sci Rep	2015
29124184	Solution structure of variant H2A.Z.1 nucleosome investigated by small-angle X-ray and neutron scatterings.	Biochem Biophys Rep	2015
26503463	Early aggregation preceding the nucleation of insulin amyloid fibrils as monitored by small angle X-ray scattering.	Sci Rep	2015
26365302	Molecular Assembly of Wheat Gliadins into Nanostructures: A Small-Angle X-ray Scattering Study of Gliadins in Distilled Water over a Wide Concentration Range.	J Agric Food Chem	2015
26073537	Preparation, characterization and magnetic behavior of a spin-labelled physical hydrogel containing a chiral cyclic nitroxide radical unit fixed inside the gelator molecule.	Soft Matter	2015
24679087	Selective Hg(II) adsorption from aqueous solutions of Hg(II) and Pb(II) by hydrolyzed acrylamide-grafted PET films.	J Environ Sci Health A Tox Hazard Subst Environ Eng	2014
24853749	Distinct features of the histone core structure in nucleosomes containing the histone H2A.B variant.	Biophys J	2014
23376067	Spatial arrangement and functional role of Î± subunits of proteasome activator PA28 in hetero-oligomeric form.	Biochem Biophys Res Commun	2013
24336483	Structural basis of a nucleosome containing histone H2A.B/H2A.Bbd that transiently associates with reorganized chromatin.	Sci Rep	2013

1 - 50 of 71

James Tolchard

European Bioinformatics Institute

Career Start Year 2017

Number of shared co-authors 3

Seung Joong Kim

Korea Advanced Institute of Science and Technology (KAIST)

Career Start Year 2006

Number of shared co-authors 4

Tobias Madl

Gottfried Schatz Research Center, Medical University of Graz

Career Start Year 2005

Number of shared co-authors 2

Tsutomu Matsui

Stanford University

Career Start Year 2003

Number of shared co-authors 13

Sebastian Hiller

University of Basel

Career Start Year 2003

Number of shared co-authors 2

Nicolas L Fawzi

Brown University

Career Start Year 2003

Number of shared co-authors 1

Riccardo Pellarin

CNRS UMR 5086 and Universite Claude Bernard Lyon 1

Career Start Year 2003

Number of shared co-authors 3

Gunnar F Schr??der

Institute of Biological Information Processing (Structural Biochemistry)

Career Start Year 2003

Number of shared co-authors 5

Igor Zhukov

Institute of Biochemistry and Biophysics, Polish Academy of Sciences

Career Start Year 1999

Number of shared co-authors 1

Thomas M Weiss

Stanford University

Career Start Year 1998

Number of shared co-authors 14

James M Holton

Lawrence Berkeley National Laboratory

Career Start Year 1997

Number of shared co-authors 3

Witek Kwiatkowski

Swiss Federal Institute of Technology

Career Start Year 1996

Number of shared co-authors 1

Michele Vendruscolo

University of Cambridge

Career Start Year 1996

Number of shared co-authors 2

Volker D??tsch

Institute for Biophysical Chemistry, Goethe-University

Career Start Year 1995

Number of shared co-authors 3

Stephen Matthews

Imperial College London

Career Start Year 1993

Number of shared co-authors 2

Huan-Xiang Zhou

University of Illinois Chicago

Career Start Year 1993

Number of shared co-authors 4

Carol V Robinson

University of Oxford

Career Start Year 1993

Number of shared co-authors 5

Rosangela Itri

Institute of Physics, University of Sao Paulo

Career Start Year 1992

Number of shared co-authors 0

Alexander P Golovanov

The University of Manchester

Career Start Year 1991

Number of shared co-authors 1

Petr Nov??k

Institute of Microbiology of the CAS

Career Start Year 1991

Number of shared co-authors 2

Vladimir N Uversky

Morsani College of Medicine, University of South Florida

Career Start Year 1987

Number of shared co-authors 1

Peter Tompa

VIB-VUB Center for Structural Biology

Career Start Year 1986

Number of shared co-authors 1

Roland Riek

ETH Zurich

Career Start Year 1986

Number of shared co-authors 1

Jayati Sengupta

Institute of Child Health

Career Start Year 1982

Number of shared co-authors 1

Mike P Williamson

The University of Sheffield

Career Start Year 1982

Number of shared co-authors 1

Michal Hammel

Lawrence Berkeley National Laboratory

Career Start Year 1981

Number of shared co-authors 15

Haruki Nakamura

Institute for Protein Research, Osaka University

Career Start Year 1980

Number of shared co-authors 5

David A Agard

University of California, USA Quantitative Biosciences Institute (QBI) san francisco

Career Start Year 1977

Number of shared co-authors 2

Christopher M Dobson

University of Cambridge

Career Start Year 1973

Number of shared co-authors 2

David Eisenberg

university of california los angeles

Career Start Year 1963

Number of shared co-authors 2

row(s) 1 - 30 of 30

Anne Martel

Institut Laue-Langevin (ILL)

Co-authored papers 9

Mamoru Sato

Yokohama City University

Co-authored papers 5

Toshiya Kozai

University of Basel

Co-authored papers 2

Torsten Schwede

University of Basel

Co-authored papers 1

Andrej Sali (CM4AI)

University of California San Francisco

Co-authored papers 1

Keehyoung Joo

Center for Advanced Computation, Korea Institute for Advanced Study

Co-authored papers 1

Jooyoung Lee

Korea Institute for Advanced Study

Co-authored papers 1

John A Tainer

The University of Texas MD Anderson Cancer Center

Co-authored papers 1

Ann H Kwan

The University of Sydney

Co-authored papers 1

Nigel Kirby

College of Biomedical & Life Sciences, Cardiff University

Co-authored papers 1

Eri Sakata

Max Planck Institute of Biochemistry

Co-authored papers 1

Jill Trewhella

The University of Sydney

Co-authored papers 1

Wayne A Hendrickson

Columbia University

Co-authored papers 1

Frank Gabel

University Grenoble Alpes, CNRS

Co-authored papers 1

Lois Pollack

Cornell University

Co-authored papers 1

Dmitri I Svergun

King's College London BHF Centre for Research Excellence

Co-authored papers 1

David A Jacques

University of New South Wales

Co-authored papers 1

Patrice Vachette

Universite Paris-Saclay, CNRS, Institute for Integrative Biology of the Cell (I2BC)

Co-authored papers 1

Greg L Hura

Lawrence Berkeley National Laboratory, University of California Santa Cruz

Co-authored papers 1

Javier P??rez

(CNRS, Universite Paris-Sud

Co-authored papers 1

John D Westbrook

The State University of New Jersey

Co-authored papers 1

Andrew E Whitten

Institute for Molecular Bioscience, University of Queensland

Co-authored papers 1

Timothy M Ryan

Pennsylvania State University, State College

Co-authored papers 1

Anthony P Duff

Bragg Institute

Co-authored papers 1

Dina Schneidman-Duhovny

The Hebrew University of Jerusalem

Co-authored papers 1

Dominique Durand

CNRS, Institute for Integrative Biology of the Cell (I2BC), Universite Paris-Saclay

Co-authored papers 1

Jules Mitchell Guss

The University of Sydney

Co-authored papers 1

1 - 27

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