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Author Details

Yasushi Ishihama
Graduate School of Pharmaceutical Sciences, Kyoto University
1994
208
55
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36370099The ProteomeXchange consortium at 10 years: 2023 update.Nucleic Acids Res2023
37751929Znf598-mediated Rps10/eS10 ubiquitination contributes to the ribosome ubiquitination dynamics during zebrafish development.RNA2023
37658684Validity of the cell-extracted proteome as a substrate pool for exploring phosphorylation motifs of kinases.Genes Cells2023
3753217711th Asia Oceania Human Proteome Organization Congress Report.Mol Cell Proteomics2023
37221815Chronic hyperglycemia reduces the expression of intercellular adhesion molecules and increases intercellular hyperpermeability in the periodontal epithelium.J Periodontal Res2023
36958626Bioinertization of NanoLC/MS/MS Systems by Depleting Metal Ions From the Mobile Phases for Phosphoproteomics.Mol Cell Proteomics2023
37230938Rational Supramolecular Strategy via Halogen Bonding for Effective Halogen Recognition in Molecular Imprinting.Anal Chem2023
37165399Expression of S100A8 protein on B cells is associated with disease activity in patients with systemic lupus erythematosus.Arthritis Res Ther2023
37328457Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids.Nat Commun2023
36480176Acetic Acid Ion Pairing Additive for Reversed-Phase HPLC Improves Detection Sensitivity in Bottom-up Proteomics Compared to Formic Acid.J Proteome Res2023
36603763Monitoring mitochondrial translation by pulse SILAC.J Biol Chem2023
34714599Peptide probes containing a non-hydrolyzable phosphotyrosine-mimetic residue for enrichment of protein tyrosine phosphatases.Proteomics2022
35474870Motif-centric phosphoproteomics to target kinase-mediated signaling pathways.Cell Rep Methods2022
35754732pSNAP: Proteome-wide analysis of elongating nascent polypeptide chains.iScience2022
35658823Retroperitoneal fibrosis requiring prompt nephrostomy in a case with immunoglobulin A vasculitis.Scand J Rheumatol2022
35412849Cyclin J-CDK complexes limit innate immune responses by reducing proinflammatory changes in macrophage metabolism.Sci Signal2022
36403516Immunoreactivity profiling of Anti-Chinese hamster ovarian host cell protein antibodies by isobaric labeled affinity purification-mass spectrometry reveals low-recovery proteins.J Chromatogr A2022
36612075Motif-Targeting Phosphoproteome Analysis of Cancer Cells for Profiling Kinase Inhibitors.Cancers (Basel)2022
36511577Classification of Extracellular Vesicles Based on Surface Glycan Structures by Spongy-like Separation Media.Anal Chem2022
36309314The Second Asia-Oceania Human Proteome Organization (AOHUPO) Online Education Series on the Renaissance of Clinical Proteomics: Biomarkers, Imaging and Therapeutics.Mol Cell Proteomics2022
36175407MYPT1-PP1β phosphatase negatively regulates both chromatin landscape and co-activator recruitment for beige adipogenesis.Nat Commun2022
36134362Moderate molecular recognitions on ZnO <i>m</i>-plane and their selective capture/release of bio-related phosphoric acids.Nanoscale Adv2022
35313349Ubiquitination at the lysine 27 residue of the Parkin ubiquitin-like domain is suggestive of a new mechanism of Parkin activation.Hum Mol Genet2022
35213742ABIN1 is a signal-induced autophagy receptor that attenuates NF-κB activation by recognizing linear ubiquitin chains.FEBS Lett2022
34962382One-Step Isolation of Protein C-Terminal Peptides from V8 Protease-Digested Proteins by Metal Oxide-Based Ligand-Exchange Chromatography.Anal Chem2022
32926143Quantitative nascent proteome profiling by dual-pulse labelling with O-propargyl-puromycin and stable isotope-labelled amino acids.J Biochem2021
33796845Exploring the landscape of ectodomain shedding by quantitative protein terminomics.iScience2021
33517145Isolation of Acetylated and Unmodified Protein N-Terminal Peptides by Strong Cation Exchange Chromatographic Separation of TrypN-Digested Peptides.Mol Cell Proteomics2021
33865858The Escherichia coli S2P intramembrane protease RseP regulates ferric citrate uptake by cleaving the sigma factor regulator FecR.J Biol Chem2021
33609411Maintenance of neural stem-progenitor cells by the lysosomal biosynthesis regulators TFEB and TFE3 in the embryonic mouse telencephalon.Stem Cells2021
33661642Peak Identification and Quantification by Proteomic Mass Spectrogram Decomposition.J Proteome Res2021
33552826Effect of Phosphorylation on the Collision Cross Sections of Peptide Ions in Ion Mobility Spectrometry.Mass Spectrom (Tokyo)2021
33687724The jPOST Repository as a Public Data Repository for Shotgun Proteomics.Methods Mol Biol2021
34526589Porphyromonas gingivalis induces entero-hepatic metabolic derangements with alteration of gut microbiota in a type 2 diabetes mouse model.Sci Rep2021
34377995A protocol for analyzing the protein terminome of human cancer cell line culture supernatants.STAR Protoc2021
34788088Discovery of anti-inflammatory physiological peptides that promote tissue repair by reinforcing epithelial barrier formation.Sci Adv2021
34636324IRAK1-dependent Regnase-1-14-3-3 complex formation controls Regnase-1-mediated mRNA decay.Elife2021
34608253Author Correction: Porphyromonas gingivalis induces entero-hepatic metabolic derangements with alteration of gut microbiota in a type 2 diabetes mouse model.Sci Rep2021
34752609Biotinylation-based proximity labelling proteomics: basics, applications and technical considerations.J Biochem2021
34805169Novel Roles of Small Extracellular Vesicles in Regulating the Quiescence and Proliferation of Neural Stem Cells.Front Cell Dev Biol2021
34740827CoolTip: Low-Temperature Solid-Phase Extraction Microcolumn for Capturing Hydrophilic Peptides and Phosphopeptides.Mol Cell Proteomics2021
34186244Identification of Endogenous Kinase Substrates by Proximity Labeling Combined with Kinase Perturbation and Phosphorylation Motifs.Mol Cell Proteomics2021
34292731Nanoscale Solid-Phase Isobaric Labeling for Multiplexed Quantitative Phosphoproteomics.J Proteome Res2021
34062387Acylated peptide enrichment utilizing lysine deacylases for lysine acylomics.Biochem Biophys Res Commun2021
34368655Phosphatidylserine-deficient small extracellular vesicle is a major somatic cell-derived sEV subpopulation in blood.iScience2021
34226921Combinatorial analysis of translation dynamics reveals eIF2 dependence of translation initiation at near-cognate codons.Nucleic Acids Res2021
33465491Asia-Oceania HUPO: Past, Present, and Future.Mol Cell Proteomics2021
33397462Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer.Genome Biol2021
33174597GlycoPOST realizes FAIR principles for glycomics mass spectrometry data.Nucleic Acids Res2021
31599158Mass Spectrometry-Compatible Subcellular Fractionation for Proteomics.J Proteome Res2020
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Collaborators

Juri Rappsilber
Institute for Biotechnology, Technical University Berlin
Co-authored papers 9
Matthias Mann
Max-Planck Institute of Biochemistry
Co-authored papers 9
Yu-Ju Chen
Institute of Chemistry
Co-authored papers 6
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Pacific Northwest National Laboratory
Co-authored papers 5
Juan Antonio Vizca??no
EMBL-European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 4
Nozomu Yachie
The University of British Columbia
Co-authored papers 3
Eric W Deutsch
Institute for Systems Biology
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EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Rintaro Saito
Institute for Advanced Biosciences, Keio University
Co-authored papers 3
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University of California
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University of Southern Denmark
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Co-authored papers 2
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Max-Planck Institute of Biochemistry
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Keio University School of Medicine
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University of Washington
Co-authored papers 2
Omar Wagih
European Bioinformatics Institute
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Robert L Moritz
Institute for Systems Biology
Co-authored papers 2
Alexander Leitner
ETH Zurich
Co-authored papers 1
Yoko Fukuda
Co-authored papers 1
Petr Nov??k
Institute of Microbiology of the CAS
Co-authored papers 1
Andrea Sinz
Center for Structural Mass Spectrometry, Martin Luther University Halle-Wittenberg
Co-authored papers 1
Nir Kalisman
Institute of Life Sciences, The Hebrew University
Co-authored papers 1
Ulrich Wagner
Co-authored papers 1
Tetsuro Toyoda
Advanced Center for Computing and Communication (ACCC)
Co-authored papers 1
Oliver Kohlbacher
Max Planck Institute for Developmental Biology
Co-authored papers 1
Brian T Chait
The Rockefeller University
Co-authored papers 1
Release 1.2