Author details

Full Name

Roger S Lasken

Affiliation

J. Craig Venter Institute

ORCID

Career Start Year

1984

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
32127543	Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons.	Nat Commun	2020
31023703	A niche-dependent myeloid transcriptome signature defines dormant myeloma cells.	Blood	2019
29590361	Cell type discovery using single-cell transcriptomics: implications for ontological representation.	Hum Mol Genet	2018
30150662	Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type.	Nat Neurosci	2018
30089273	Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development.	Cell Rep	2018
30586455	Single-nucleus and single-cell transcriptomes compared in matched cortical cell types.	PLoS One	2018
29703932	Author Correction: L1-associated genomic regions are deleted in somatic cells of the healthy human brain.	Nat Neurosci	2018
27897007	PRODUCTION OF A PRELIMINARY QUALITY CONTROL PIPELINE FOR SINGLE NUCLEI RNA-SEQ AND ITS APPLICATION IN THE ANALYSIS OF CELL TYPE DIVERSITY OF POST-MORTEM HUMAN BRAIN NEOCORTEX.	Pac Symp Biocomput	2017
28303884	Corrigendum: Nuclear RNA-seq of single neurons reveals molecular signatures of activation.	Nat Commun	2017
28474498	The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the candidate superphylum Parcubacteria (OD1).	Environ Microbiol	2017
29322913	Cell type discovery and representation in the era of high-content single cell phenotyping.	BMC Bioinformatics	2017
28949329	Corrigendum: L1-associated genomic regions are deleted in somatic cells of the healthy human brain.	Nat Neurosci	2017
28947747	A Whole Blood Molecular Signature for Acute Myocardial Infarction.	Sci Rep	2017
28606096	Pan-cancer analysis reveals technical artifacts in TCGA germline variant calls.	BMC Genomics	2017
27090946	Nuclear RNA-seq of single neurons reveals molecular signatures of activation.	Nat Commun	2016
27618310	L1-associated genomic regions are deleted in somatic cells of the healthy human brain.	Nat Neurosci	2016
27698428	Predicting the functional states of human iPSC-derived neurons with single-cell RNA-seq and electrophysiology.	Mol Psychiatry	2016
27295945	Corrigendum: Nuclear RNA-seq of single neurons reveals molecular signatures of activation.	Nat Commun	2016
26890679	Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons.	Nat Protoc	2016
26199412	Simultaneous deletion of the methylcytosine oxidases Tet1 and Tet3 increases transcriptome variability in early embryogenesis.	Proc Natl Acad Sci U S A	2015
26386059	Single cells within the Puerto Rico trench suggest hadal adaptation of microbial lineages.	Appl Environ Microbiol	2015
25091868	Recent advances in genomic DNA sequencing of microbial species from single cells.	Nat Rev Genet	2014
25621014	Single cell genomics of bacterial pathogens: outlook for infectious disease research.	Genome Med	2014
25407910	NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly.	BMC Bioinformatics	2014
23282328	Sequencing of isolated sperm cells for direct haplotyping of a human genome.	Genome Res	2013
24093227	Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.	J Comput Biol	2013
24248345	RNA-sequencing from single nuclei.	Proc Natl Acad Sci U S A	2013
24179226	Mosaic copy number variation in human neurons.	Science	2013
23728084	Isolation and genome analysis of single virions using 'single virus genomics'.	J Vis Exp	2013
23754396	Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum.	Proc Natl Acad Sci U S A	2013
23471069	Single-cell sequencing in its prime.	Nat Biotechnol	2013
23435891	Comparative genomic analysis of phylogenetically closely related Hydrogenobaculum sp. isolates from Yellowstone National Park.	Appl Environ Microbiol	2013
23405308	Draft Genome Sequence of a Single Cell of SAR86 Clade Subgroup IIIa.	Genome Announc	2013
23493677	Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome.	Genome Res	2013
23564253	Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform.	Genome Res	2013
22170421	Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.	ISME J	2012
23271437	The green monster process for the generation of yeast strains carrying multiple gene deletions.	J Vis Exp	2012
22890147	Genomic sequencing of uncultured microorganisms from single cells.	Nat Rev Microbiol	2012
21436882	Single virus genomics: a new tool for virus discovery.	PLoS One	2011
21926975	Efficient de novo assembly of single-cell bacterial genomes from short-read data sets.	Nat Biotechnol	2011
21629664	Going deeper: metagenome of a hadopelagic microbial community.	PLoS One	2011
21555588	Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula.	Proc Natl Acad Sci U S A	2011
21533272	Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage.	PLoS One	2011
20668244	Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton.	Proc Natl Acad Sci U S A	2010
20942932	Multiple displacement amplification as an adjunct to PCR-based detection of Staphylococcus aureus in synovial fluid.	BMC Res Notes	2010
19290880	Genomic DNA amplification by the multiple displacement amplification (MDA) method.	Biochem Soc Trans	2009
18256705	Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology.	ISME J	2008
18550420	Genomic sequencing of single microbial cells from environmental samples.	Curr Opin Microbiol	2008
17109170	Specific single-cell isolation and genomic amplification of uncultured microorganisms.	Appl Microbiol Biotechnol	2007
17923430	Single-cell genomic sequencing using Multiple Displacement Amplification.	Curr Opin Microbiol	2007

1 - 50 of 73

Jared T Simpson

Ontario Institute for Cancer Research

Career Start Year 2009

Number of shared co-authors 2

Christopher J Fields

University of Illinois Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 1

Gang Fang

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 1

Christopher E Mason

Feil Family Brain and Mind Research Institute.

Career Start Year 2004

Number of shared co-authors 2

Ali Bashir

Google Accelerated Science Team, Google Inc

Career Start Year 2003

Number of shared co-authors 0

Harm van Bakel

Icahn School of Medicine at Mount Sinai

Career Start Year 2002

Number of shared co-authors 2

Eula Fung

Stanford University School of Medicine

Career Start Year 2000

Number of shared co-authors 4

Karen Moore

University of Exeter

Career Start Year 2000

Number of shared co-authors 0

Cynthia Andrews-Pfannkoch

Mayo Clinic

Career Start Year 2000

Number of shared co-authors 11

Eileen T Dimalanta

New England Biolabs Inc.

Career Start Year 1999

Number of shared co-authors 0

Nicholas J Loman

University of Birmingham

Career Start Year 1998

Number of shared co-authors 3

Thomas Junier

Institute of Biology, University of Neuchatel

Career Start Year 1998

Number of shared co-authors 4

Vincent Magrini

The Ohio State University

Career Start Year 1997

Number of shared co-authors 1

Thomas Brettin

University of Chicago

Career Start Year 1996

Number of shared co-authors 10

Joseph L DeRisi

University of California San Francisco

Career Start Year 1994

Number of shared co-authors 1

Timothy T Harkins

NVIDIA Corporation

Career Start Year 1994

Number of shared co-authors 1

William C Nelson

Pacific Northwest National Laboratory

Career Start Year 1993

Number of shared co-authors 10

Steven L Salzberg

Center for Computational Biology, Johns Hopkins University

Career Start Year 1992

Number of shared co-authors 12

Joakim Lundeberg

KTH Royal Institute of Technology

Career Start Year 1990

Number of shared co-authors 5

Mark D Adams

Case Western Reserve University School of Medicine

Career Start Year 1989

Number of shared co-authors 16

Owen White

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 1988

Number of shared co-authors 20

Andreas Gnirke

The Center for Genome Architecture, Baylor College of Medicine

Career Start Year 1986

Number of shared co-authors 2

David C Schwartz

University of Wisconsin-Madison

Career Start Year 1983

Number of shared co-authors 5

Bruce W Birren

Broad Institute of MIT and Harvard

Career Start Year 1983

Number of shared co-authors 14

George M Weinstock

The Genome Center at Washington University, Washington University School of Medicine

Career Start Year 1979

Number of shared co-authors 17

George M Church

Harvard Medical School

Career Start Year 1977

Number of shared co-authors 11

Norma Neff

Stanford University

Career Start Year 1974

Number of shared co-authors 2

Thomas R Gingeras

Stanley Institute for Cognitive Genomics

Career Start Year 1974

Number of shared co-authors 3

Erica Sodergren

The Genome Institute at Washington University

Career Start Year 1972

Number of shared co-authors 11

Ronald W Davis

Stanford University

Career Start Year 1968

Number of shared co-authors 8

row(s) 1 - 30 of 30

Richard H Scheuermann

J. Craig Venter Institute

Co-authored papers 7

Brian D Aevermann

J. Craig Venter Institute

Co-authored papers 7

Ed S Lein

Allen Institute for Brain Science

Co-authored papers 7

Jeremy A Miller

Co-authored papers 7

Nicholas J Schork

University of California San Diego

Co-authored papers 7

Pavel A Pevzner

University of California

Co-authored papers 6

Trygve E Bakken

Allen Institute for Brain Science

Co-authored papers 6

Stephen F Kingsmore

Rady Children's Institute for Genomic Medicine

Co-authored papers 4

J C Venter

The J. Craig Venter Institute

Co-authored papers 4

Tanja Woyke

Co-authored papers 4

Jonathan H Badger

Center for Cancer Research, National Cancer Institute, National Institutes of Health

Co-authored papers 4

Alysson R Muotri

Department of Pediatrics/Rady Children's Hospital, University of California San Diego

Co-authored papers 3

Shannon J Williamson

J. Craig Venter Institute

Co-authored papers 3

Tracy A Bedrosian

Institute for Genomic Medicine, Nationwide Children's Hospital

Co-authored papers 3

Shibu Yooseph

University of Central Florida

Co-authored papers 3

Douglas B Rusch

Center for Genomics and Bioinformatics, Indiana University

Co-authored papers 3

Robert Friedman

University of South Carolina

Co-authored papers 3

Eric E Allen

Co-authored papers 2

Michael G Ziegler

University of California San Diego School of Medicine

Co-authored papers 2

Aaron L Halpern

Illumina Inc.

Co-authored papers 2

Amy Bernard

The Kavli Foundation

Co-authored papers 2

Kunal Bhutani

University of California

Co-authored papers 2

Garth D Ehrlich

Co-authored papers 2

Song-Lin Ding

Allen Institute for Brain Science

Co-authored papers 2

William H Gerwick

Scripps Institution of Oceanography, University of California San Diego

Co-authored papers 2

Pieter C Dorrestein

Co-authored papers 2

Emiley A Eloe-Fadrosh

DOE Joint Genome Institute, Lawrence Berkeley National Laboratory

Co-authored papers 1

Karen W Davenport

Los Alamos National Laboratory

Co-authored papers 1

Nozomu Yachie

The University of British Columbia

Co-authored papers 1

Hongkui Zeng

Allen Institute for Brain Science

Co-authored papers 1

1 - 30

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