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Author Details

Si Wu
The Fourth Hospital of Hebei Medical University
1995
86
31
Leah V Schaffer (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36073303Comparison of the tumor immune microenvironment phenotypes in different breast cancers after neoadjuvant therapy.Cancer Med2023
37267721RT-qPCR is helpful to distinguish the clinicopathological features of HER2 immunohistochemistry 0 and 1.Pathol Res Pract2023
36788100The Role of Artificial Intelligence in Accurate Interpretation of HER2 Immunohistochemical Scores 0 and 1+ in Breast Cancer.Mod Pathol2023
36910643Evolution and clinical significance of HER2-low status after neoadjuvant therapy for breast cancer.Front Oncol2023
35934336Optimization of protein-level tandem mass tag (TMT) labeling conditions in complex samples with top-down proteomics.Anal Chim Acta2022
33384131High-throughput hydrogen deuterium exchange mass spectrometry (HDX-MS) coupled with subzero-temperature ultrahigh pressure liquid chromatography (UPLC) separation for complex sample analysis.Anal Chim Acta2021
33646748Spray-Capillary-Based Capillary Electrophoresis Mass Spectrometry for Metabolite Analysis in Single Cells.Anal Chem2021
33643238Mechanisms of Manganese(II) Oxidation by Filamentous Ascomycete Fungi Vary With Species and Time as a Function of Secretome Composition.Front Microbiol2021
33780241TopMSV: A Web-Based Tool for Top-Down Mass Spectrometry Data Visualization.J Am Soc Mass Spectrom2021
33725447Quantitative Top-Down Proteomics in Complex Samples Using Protein-Level Tandem Mass Tag Labeling.J Am Soc Mass Spectrom2021
34874672Is intestinal metaplasia the point of no return in the progression of gastric carcinogenesis?Chin Med J (Engl)2021
32649523Recent advances of miRNAs in the development and clinical application of gastric cancer.Chin Med J (Engl)2020
31932818High-throughput quantitative top-down proteomics.Mol Omics2020
31793760Spray-Capillary: An Electrospray-Assisted Device for Quantitative Ultralow-Volume Sample Handling.Anal Chem2020
33302437Mapping Influenza-Induced Posttranslational Modifications on Histones from CD8+ T Cells.Viruses2020
32857493Development of an Online 2D Ultrahigh-Pressure Nano-LC System for High-pH and Low-pH Reversed Phase Separation in Top-Down Proteomics.Anal Chem2020
30638379A Markov Chain Monte Carlo Method for Estimating the Statistical Significance of Proteoform Identifications by Top-Down Mass Spectrometry.J Proteome Res2019
31755044Deep Intact Proteoform Characterization in Human Cell Lysate Using High-pH and Low-pH Reversed-Phase Liquid Chromatography.J Am Soc Mass Spectrom2019
30889443Enhancing the anaerobic bioconversion of complex organics in food wastes for volatile fatty acids production by zero-valent iron and persulfate stimulation.Sci Total Environ2019
30787393Top-down Mass Spectrometry Analysis of Human Serum Autoantibody Antigen-Binding Fragments.Sci Rep2019
31050378Identification and Quantification of Proteoforms by Mass Spectrometry.Proteomics2019
30576108Transient Compound Treatment Induces a Multigenerational Reduction of Oxysterol-Binding Protein (OSBP) Levels and Prophylactic Antiviral Activity.ACS Chem Biol2019
29327814Systematic Evaluation of Protein Sequence Filtering Algorithms for Proteoform Identification Using Top-Down Mass Spectrometry.Proteomics2018
31097918Two-Dimensional Separation Using High-pH and Low-pH Reversed Phase Liquid Chromatography for Top-down Proteomics.Int J Mass Spectrom2018
30591035Evaluation of top-down mass spectral identification with homologous protein sequences.BMC Bioinformatics2018
27832539Profiling Changes in Histone Post-translational Modifications by Top-Down Mass Spectrometry.Methods Mol Biol2017
28083757Finding Biomass Degrading Enzymes Through an Activity-Correlated Quantitative Proteomics Platform (ACPP).J Am Soc Mass Spectrom2017
28453668A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra.Bioinformatics2017
29503761A Spectrum Graph-Based Protein Sequence Filtering Algorithm for Proteoform Identification by Top-Down Mass Spectrometry.Proceedings (IEEE Int Conf Bioinformatics Biomed)2017
29110399De Novo Sequencing of Peptides from High-Resolution Bottom-Up Tandem Mass Spectra using Top-Down Intended Methods.Proteomics2017
28676260Quantitative iTRAQ-based secretome analysis reveals species-specific and temporal shifts in carbon utilization strategies among manganese(II)-oxidizing Ascomycete fungi.Fungal Genet Biol2017
27434633Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi.PLoS One2016
27291504Characterization of Proteoforms with Unknown Post-translational Modifications Using the MIScore.J Proteome Res2016
27140194Intact glycopeptide characterization using mass spectrometry.Expert Rev Proteomics2016
27187201Top-down analysis of protein samples by de novo sequencing techniques.Bioinformatics2016
26398520Correction: Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants.PLoS One2015
26412692De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra.J Proteome Res2015
26317212Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants.PLoS One2015
24440233Characterization of intact N- and O-linked glycopeptides using higher energy collisional dissociation.Anal Biochem2014
25523396A new scoring function for top-down spectral deconvolution.BMC Genomics2014
25014346High-throughput proteomics.Annu Rev Anal Chem (Palo Alto Calif)2014
25117693Structural analysis of N- and O-glycans using ZIC-HILIC/dialysis coupled to NMR detection.Fungal Genet Biol2014
25143833A method to determine lysine acetylation stoichiometries.Int J Proteomics2014
24802639Automated genome mining of ribosomal peptide natural products.ACS Chem Biol2014
24874765De novo protein sequencing by combining top-down and bottom-up tandem mass spectra.J Proteome Res2014
24623704LipidMiner: a software for automated identification and quantification of lipids from multiple liquid chromatography/mass spectrometry data files.Rapid Commun Mass Spectrom2014
24591407Quantitative analysis of human salivary gland-derived intact proteome using top-down mass spectrometry.Proteomics2014
24644084The first pilot project of the consortium for top-down proteomics: a status report.Proteomics2014
24634104An integrated top-down and bottom-up proteomic approach to characterize the antigen-binding fragment of antibodies.Proteomics2014
24333276Proteomic identification and quantification of S-glutathionylation in mouse macrophages using resin-assisted enrichment and isobaric labeling.Free Radic Biol Med2014
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Collaborators

Ljiljana Pa??a-Toli??
Pacific Northwest National Laboratory
Co-authored papers 38
Xiaowen Liu
Tulane Center for Biomedical Informatics and Genomics, Tulane University
Co-authored papers 21
Richard D Smith
Pacific Northwest National Laboratory
Co-authored papers 20
Zhe Wang
University of Oklahoma
Co-authored papers 13
Rui Zhao
Co-authored papers 12
Ronald J Moore
Co-authored papers 12
Samuel O Purvine
Pacific Northwest National Laboratory
Co-authored papers 9
Pavel A Pevzner
University of California
Co-authored papers 8
Erika M Zink
Pacific Northwest National Laboratory
Co-authored papers 6
Mary S Lipton
Pacific Northwest National Laboratory
Co-authored papers 6
Qibin Zhang
Center for Translational Biomedical Research
Co-authored papers 5
Matthew E Monroe
Pacific Northwest National Laboratory
Co-authored papers 5
Gordon A Anderson
Co-authored papers 5
James E Bruce
Co-authored papers 5
Aleksey V Tolmachev
Co-authored papers 5
Daniel J Orton
Co-authored papers 4
Samuel H Payne
Brigham Young University
Co-authored papers 4
Joshua N Adkins
Co-authored papers 4
David G Camp
Co-authored papers 4
Charles Ansong
Pacific Northwest National Laboratory
Co-authored papers 3
Wei-Jun Qian
Co-authored papers 3
Ernesto S Nakayasu
Co-authored papers 2
Paul M Thomas
Northwestern University
Co-authored papers 2
Ryan T Fellers
Northwestern University
Co-authored papers 2
Paul D Piehowski
Pacific Northwest National Laboratory
Co-authored papers 2
Feng Yang
Howard Hughes Medical Institute, University of California San Diego
Co-authored papers 2
Liangliang Sun
Michigan State University
Co-authored papers 2
Neil L Kelleher
Northwestern University
Co-authored papers 2
Kristin E Burnum-Johnson
Pacific Northwest National Laboratory
Co-authored papers 2
Rosalie K Chu
Co-authored papers 2
Release 1.2