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Author Details

Stephen E Stein
1988
91
31
PMIDPaper TitleJournal TitlePublished Year
37232537AIomics: Exploring More of the Proteome Using Mass Spectral Libraries Extended by Artificial Intelligence.2023
37647588Determining Site-Specific Glycan Profiles of Recombinant SARS-CoV-2 Spike Proteins from Multiple Sources.2023
37610141Inferring the Nominal Molecular Mass of an Analyte from Its Electron Ionization Mass Spectrum.2023
36269933Unexpected Gas-Phase Nitrogen-Oxygen Smiles Rearrangement: Collision-Induced Dissociation of Deprotonated 2-(-Methylanilino)ethanol and Morpholinylbenzoic Acid Derivatives.Journal of the American Society for Mass Spectrometry2022
36112477Mass Spectral Library Methods for Analysis of Site-Specific N-Glycosylation: Application to Human Milk Proteins.Journal of Proteome Research2022
33404064Creation and filtering of a recurrent spectral library of CHO cell metabolites and media components.Biotechnology and Bioengineering2021
33586949CID Fragmentation of Deprotonated -Acyl Aromatic Sulfonamides. Smiles-Type and Nitrogen-Oxygen Rearrangements.Journal of the American Society for Mass Spectrometry2021
34264676MS_Piano: A Software Tool for Annotating Peaks in CID Tandem Mass Spectra of Peptides and N-Glycopeptides.Journal of Proteome Research2021
33555887Comprehensive Analysis of Tryptic Peptides Arising from Disulfide Linkages in NISTmAb and Their Use for Developing a Mass Spectral Library.Journal of Proteome Research2021
34327998Representing and Comparing Site-Specific Glycan Abundance Distributions of Glycoproteins.Journal of Proteome Research2021
32639750Increasing the Coverage of a Mass Spectral Library of Milk Oligosaccharides Using a Hybrid-Search-Based Bootstrapping Method and Milks from a Wide Variety of Mammals.Analytical Chemistry2020
31591262NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods.Mol Cell Proteomics2020
32118408Disparate Metabolomics Data Reassembler: A Novel Algorithm for Agglomerating Incongruent LC-MS Metabolomics Datasets.Anal Chem2020
31670846Sensitive Method for the Confident Identification of Genetically Variant Peptides in Human Hair Keratin.2020
32271007Mass Spectral Library of Acylcarnitines Derived from Human Urine.Analytical Chemistry2020
31859486Correction to Mass Spectrometry Fingerprints of Small-Molecule Metabolites in Biofluids: Building a Spectral Library of Recurrent Spectra for Urine Analysis.Analytical Chemistry2020
31424920Mass Spectrometry Fingerprints of Small-Molecule Metabolites in Biofluids: Building a Spectral Library of Recurrent Spectra for Urine Analysis.Analytical Chemistry2019
31600070Hybrid Search: A Method for Identifying Metabolites Absent from Tandem Mass Spectrometry Libraries.Analytical Chemistry2019
30565163Cross-Ring Fragmentation Patterns in the Tandem Mass Spectra of Underivatized Sialylated Oligosaccharides and Their Special Suitability for Spectrum Library Searching.Journal of the American Society for Mass Spectrometry2019
31364354False Discovery Rate Estimation for Hybrid Mass Spectral Library Search Identifications in Bottom-up Proteomics.Journal of Proteome Research2019
29783146Gas chromatographic-mass spectrometric characterization of thebaol, an opium constituent, and its structural analogs.Journal of Pharmaceutical and Biomedical Analysis2018
29969231Creating a Mass Spectral Reference Library for Oligosaccharides in Human Milk.Analytical Chemistry2018
29143271Collision-Induced Dissociation of Deprotonated Peptides. Relative Abundance of Side-Chain Neutral Losses, Residue-Specific Product Ions, and Comparison with Protonated Peptides.Journal of the American Society for Mass Spectrometry2018
29425077The NISTmAb tryptic peptide spectral library for monoclonal antibody characterization.mAbs2018
29281288Reverse and Random Decoy Methods for False Discovery Rate Estimation in High Mass Accuracy Peptide Spectral Library Searches.Journal of Proteome Research2018
28127680Mass Spectral Library Quality Assurance by Inter-Library Comparison.Journal of the American Society for Mass Spectrometry2017
28721670Extending a Tandem Mass Spectral Library to Include MS Spectra of Fragment Ions Produced In-Source and MS Spectra.Journal of the American Society for Mass Spectrometry2017
28367633The Hybrid Search: A Mass Spectral Library Search Method for Discovery of Modifications in Proteomics.Journal of Proteome Research2017
29156120Combining Fragment-Ion and Neutral-Loss Matching during Mass Spectral Library Searching: A New General Purpose Algorithm Applicable to Illicit Drug Identification.Analytical Chemistry2017
27943490Analysis of human plasma metabolites across different liquid chromatography/mass spectrometry platforms: Cross-platform transferable chemical signatures.Rapid Communications in Mass Spectrometry2017
27550836Data quality issues in proteomics - there are many paths to enlightenment.Proteomics2016
34434633Human Plasma Metabolites Measured with Different Liquid Chromatography/Mass Spectrometry (LC/MS) Platforms.Journal of Research of the National Institute of Standards and Technology2016
26842580Analysis of human plasma metabolites across different liquid chromatography/mass spectrometry platforms: Cross-platform transferable chemical signatures.Rapid Communications in Mass Spectrometry2016
27386737Interconversion of Peptide Mass Spectral Libraries Derivatized with iTRAQ or TMT Labels.Journal of Proteome Research2016
26860878A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline.J Proteome Res2016
26990841In-Depth Characterization and Spectral Library Building of Glycopeptides in the Tryptic Digest of a Monoclonal Antibody Using 1D and 2D LC-MS/MS.Journal of Proteome Research2016
26212280Reaction of arylium ions with the collision gas N2 in electrospray ionization mass spectrometry.Rapid Communications in Mass Spectrometry2015
26136848InChI, the IUPAC International Chemical Identifier.Journal of Cheminformatics2015
24563535Improved normalization of systematic biases affecting ion current measurements in label-free proteomics data.Molecular and Cellular Proteomics2014
25366411Unexpected peaks in tandem mass spectra due to reaction of product ions with residual water in mass spectrometer collision cells.Rapid Communications in Mass Spectrometry2014
24294946Quantitative bottom-up proteomics depends on digestion conditions.Analytical Chemistry2014
24494671QC metrics from CPTAC raw LC-MS/MS data interpreted through multivariate statistics.Analytical Chemistry2014
25233296Creation of libraries of recurring mass spectra from large data sets assisted by a dual-column workflow.Analytical Chemistry2014
24896981Quality control for building libraries from electrospray ionization tandem mass spectra.Analytical Chemistry2014
24889059Tandem mass spectral libraries of peptides in digests of individual proteins: Human Serum Albumin (HSA).Molecular and Cellular Proteomics2014
25088131Loss of H2 and CO from protonated aldehydes in electrospray ionization mass spectrometry.Rapid Communications in Mass Spectrometry2014
23291961Characterizing Vaccinium berry Standard Reference Materials by GC-MS using NIST spectral libraries.Analytical and Bioanalytical Chemistry2013
22941178Developing qualitative LC-MS methods for characterization of Vaccinium berry Standard Reference Materials.Analytical and Bioanalytical Chemistry2013
24116745Comprehensive analysis of protein digestion using six trypsins reveals the origin of trypsin as a significant source of variability in proteomics.J Proteome Res2013
24147600Metabolite profiling of a NIST Standard Reference Material for human plasma (SRM 1950): GC-MS, LC-MS, NMR, and clinical laboratory analyses, libraries, and web-based resources.Analytical Chemistry2013
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