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Author Details

William C Nelson
Pacific Northwest National Laboratory
1993
101
53
Gloria M Sheynkman (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36789294Snekmer: a scalable pipeline for protein sequence fingerprinting based on amino acid recoding.Bioinform Adv2023
36154140Interaction Networks Are Driven by Community-Responsive Phenotypes in a Chitin-Degrading Consortium of Soil Microbes.mSystems2022
35770883An activity-based probe targeting the streptococcal virulence factor C5a peptidase.Chem Commun (Camb)2022
36455065Evaluation of co-circulating pathogens and microbiome from COVID-19 infections.PLoS One2022
35961013A roadmap for the functional annotation of protein families: a community perspective.Database (Oxford)2022
36394319A Mineral-Doped Micromodel Platform Demonstrates Fungal Bridging of Carbon Hot Spots and Hyphal Transport of Mineral-Derived Nutrients.mSystems2022
33414283Draft Genome Sequence of <i>Fusarium</i> sp. Strain DS 682, a Novel Fungal Isolate from the Grass Rhizosphere.Microbiol Resour Announc2021
34809453A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets.mBio2021
34724822DNA Viral Diversity, Abundance, and Functional Potential Vary across Grassland Soils with a Range of Historical Moisture Regimes.mBio2021
32763940Terabase Metagenome Sequencing of Grassland Soil Microbiomes.Microbiol Resour Announc2020
31986180Distinct temporal diversity profiles for nitrogen cycling genes in a hyporheic microbiome.PLoS One2020
33194386Biases in genome reconstruction from metagenomic data.PeerJ2020
33193121Representing Organic Matter Thermodynamics in Biogeochemical Reactions via Substrate-Explicit Modeling.Front Microbiol2020
33291229The Specific Carbohydrate Diet and Diet Modification as Induction Therapy for Pediatric Crohn's Disease: A Randomized Diet Controlled Trial.Nutrients2020
32636252Deconstructing the Soil Microbiome into Reduced-Complexity Functional Modules.mBio2020
30967468Correction for Christensen et al., "Identification of Novel Protein Lysine Acetyltransferases in Escherichia coli".mBio2019
31263456Minimal Interspecies Interaction Adjustment (MIIA): Inference of Neighbor-Dependent Interactions in Microbial Communities.Front Microbiol2019
29321512Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture.Sci Rep2018
29855404Corrigendum: Saliniramus fredricksonii gen. nov., sp. nov., a heterotrophic halophile isolated from Hot Lake, Washington, a member of a novel lineage (Salinarimonadaceae fam. nov.) within the order Rhizobiales, and reclassification of the genus Salinarimonas Liu et al. 2010 into Salinarimonadaceae.Int J Syst Evol Microbiol2018
29979671Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.Nat Biotechnol2018
29920461Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone.Sci Total Environ2018
30352934Identification of Novel Protein Lysine Acetyltransferases in Escherichia coli.mBio2018
29422537Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.Nat Commun2018
29580321Salinivirga fredricksonii gen. nov., sp. nov., a heterotrophic halophile isolated from a photosynthetic mat, a member of a novel lineage (Salinarimonadaceae fam. nov.) within the order Rhizobiales, and reclassification of the genus Salinarimonas Liu et al. 2010 into Salinarimonadaceae.Int J Syst Evol Microbiol2018
29439050Draft Genome Sequence of <i>Cyanobacterium</i> sp. Strain HL-69, Isolated from a Benthic Microbial Mat from a Magnesium Sulfate-Dominated Hypersaline Lake.Genome Announc2018
29515121Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.Nat Commun2018
29406516Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.Nat Biotechnol2018
28787424Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.Nat Biotechnol2017
28334407Organismal and spatial partitioning of energy and macronutrient transformations within a hypersaline mat.FEMS Microbiol Ecol2017
28186498Underlying mechanisms for syntrophic metabolism of essential enzyme cofactors in microbial communities.ISME J2017
28391700Effect of Water Chemistry and Hydrodynamics on Nitrogen Transformation Activity and Microbial Community Functional Potential in Hyporheic Zone Sediment Columns.Environ Sci Technol2017
28618201Targeted quantification of functional enzyme dynamics in environmental samples for microbially mediated biogeochemical processes.Environ Microbiol Rep2017
28659875Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated 'Omics Approach.Front Microbiol2017
28931901Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies.Sci Rep2017
27052662Groundwater-surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover.Nat Commun2016
25831533Trichodesmium genome maintains abundant, widespread noncoding DNA in situ, despite oligotrophic lifestyle.Proc Natl Acad Sci U S A2015
26497460Identification and Resolution of Microdiversity through Metagenomic Sequencing of Parallel Consortia.Appl Environ Microbiol2015
26257709The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle.Front Microbiol2015
24482507Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain NK55a.Genome Announc2014
23717306Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia.Front Microbiol2013
23638384Microbial secondary succession in soil microcosms of a desert oasis in the Cuatro Cienegas Basin, Mexico.PeerJ2013
22050608Metagenomic analysis of a complex marine planktonic thaumarchaeal community from the Gulf of Maine.Environ Microbiol2012
22447590Comparative analysis of eukaryotic marine microbial assemblages from 18S rRNA gene and gene transcript clone libraries by using different methods of extraction.Appl Environ Microbiol2012
22563047Novel miniature transposable elements in thermophilic Synechococcus strains and their impact on an environmental population.J Bacteriol2012
22319515Prospects for the study of evolution in the deep biosphere.Front Microbiol2012
21335390Genomic potential of Marinobacter aquaeolei, a biogeochemical "opportunitroph".Appl Environ Microbiol2011
21966516Mariprofundus ferrooxydans PV-1 the first genome of a marine Fe(II) oxidizing Zetaproteobacterium.PLoS One2011
21666019Analysis of insertion sequences in thermophilic cyanobacteria: exploring the mechanisms of establishing, maintaining, and withstanding high insertion sequence abundance.Appl Environ Microbiol2011
19609599The FibRumBa database: a resource for biologists with interests in gastrointestinal microbial ecology, plant biomass degradation, and anaerobic microbiology.Microb Ecol2010
19201974Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.Appl Environ Microbiol2009
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Collaborators

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University of Maryland School of Medicine, Institute for Genome Sciences
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The J. Craig Venter Institute
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Yale University School of Medicine
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Personal Genome Diagnostics Inc.
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University of Saskatchewan
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Hanyang University
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University of Maryland School of Medicine, Institute for Genome Sciences
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