Author details

Full Name

Andy D Perkins

Affiliation

Mississippi State University

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35197051	Use of nCounter mRNA profiling to identify at-arrival gene expression patterns for predicting bovine respiratory disease in beef cattle.	BMC Vet Res	2022
36327246	Hematological and gene co-expression network analyses of high-risk beef cattle defines immunological mechanisms and biological complexes involved in bovine respiratory disease and weight gain.	PLoS One	2022
34870283	No-boundary thinking: a viable solution to ethical data-driven AI in precision medicine.	AI Ethics	2022
34824337	Genes and regulatory mechanisms associated with experimentally-induced bovine respiratory disease identified using supervised machine learning methodology.	Sci Rep	2021
33901263	Comprehensive at-arrival transcriptomic analysis of post-weaned beef cattle uncovers type I interferon and antiviral mechanisms associated with bovine respiratory disease mortality.	PLoS One	2021
34903778	Multipopulational transcriptome analysis of post-weaned beef cattle at arrival further validates candidate biomarkers for predicting clinical bovine respiratory disease.	Sci Rep	2021
32285554	Transcribed microsatellite allele lengths are often correlated with gene expression in natural sunflower populations.	Mol Ecol	2020
31929561	Whole blood transcriptomic analysis of beef cattle at arrival identifies potential predictive molecules and mechanisms that indicate animals that naturally resist bovine respiratory disease.	PLoS One	2020
32631298	Toward a more holistic method of genome assembly assessment.	BMC Bioinformatics	2020
31465454	Comparative genomics of Aeromonas veronii: Identification of a pathotype impacting aquaculture globally.	PLoS One	2019
29057498	Acetylation and methylation of sperm histone 3 lysine 27 (H3K27ac and H3K27me3) are associated with bull fertility.	Andrologia	2018
29419922	Transcriptome profiles of sunflower reveal the potential role of microsatellites in gene expression divergence.	Mol Ecol	2018
27897015	NO-BOUNDARY THINKING IN BIOINFORMATICS.	Pac Symp Biocomput	2017
28764714	Testis specific histone 2B is associated with sperm chromatin dynamics and bull fertility-a pilot study.	Reprod Biol Endocrinol	2017
25504377	Molecular physiognomies and applications of adipose-derived stem cells.	Stem Cell Rev Rep	2015
26334534	Using genome-wide associations to identify metabolic pathways involved in maize aflatoxin accumulation resistance.	BMC Genomics	2015
25896743	Sperm superoxide dismutase is associated with bull fertility.	Reprod Fertil Dev	2015
25912991	Clustering high throughput biological data with B-MST, a minimum spanning tree based heuristic.	Comput Biol Med	2015
25670967	Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm.	BioData Min	2015
24770700	Relating significance and relations of differentially expressed genes in response to Aspergillus flavus infection in maize.	Sci Rep	2014
25350879	Proceedings of the 2014 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.	BMC Bioinformatics	2014
25189238	Patterns of microsatellite evolution inferred from the Helianthus annuus (Asteraceae) transcriptome.	J Genet	2014
23263965	Gene expression analysis of copper tolerance and wood decay in the brown rot fungus Fibroporia radiculosa.	Appl Environ Microbiol	2013
24192339	No-boundary thinking in bioinformatics research.	BioData Min	2013
24267415	Proceedings of the 2013 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.	BMC Bioinformatics	2013
22247176	Short-read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa.	Appl Environ Microbiol	2012
22978562	Dynamics of microRNAs in bull spermatozoa.	Reprod Biol Endocrinol	2012
23144527	Clustering of High Throughput Gene Expression Data.	Comput Oper Res	2012
22759431	A systematic comparison of genome-scale clustering algorithms.	BMC Bioinformatics	2012
19216740	A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation.	BMC Syst Biol	2009
19811688	Threshold selection in gene co-expression networks using spectral graph theory techniques.	BMC Bioinformatics	2009
19811686	Integrating phenotype and gene expression data for predicting gene function.	BMC Bioinformatics	2009
18440239	Gender differences in inflammatory proteins and pathways in seasonal allergic rhinitis.	Cytokine	2008
17542012	Genome-level analysis of genetic regulation of liver gene expression networks.	Hepatology	2007
16854212	Extracting gene networks for low-dose radiation using graph theoretical algorithms.	PLoS Comput Biol	2006

1 - 35 of 35

Matthew L Settles

University of California Davis Genome Center

Career Start Year 2008

Number of shared co-authors 1

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 0

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 0

Dongxiao Zhu

Wayne State University

Career Start Year 2005

Number of shared co-authors 0

Feng Luo

Clemson University

Career Start Year 2004

Number of shared co-authors 0

Anis Karimpour-Fard

University of Colorado

Career Start Year 2004

Number of shared co-authors 1

Ricardo Z N V??ncio

University of Sao Paulo

Career Start Year 2003

Number of shared co-authors 1

Scott J Emrich

The Pennsylvania State University College of Medicine

Career Start Year 2002

Number of shared co-authors 0

Ying Xu

The China-Japan Union Hospital, Jilin University

Career Start Year 2002

Number of shared co-authors 0

Johan Rung

Uppsala University

Career Start Year 2001

Number of shared co-authors 1

Erliang Zeng

College of Dentistry, University of Iowa

Career Start Year 2001

Number of shared co-authors 0

Ana Conesa

Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)

Career Start Year 2000

Number of shared co-authors 0

David R Powell

Biomedicine Discovery Institute, Monash University

Career Start Year 1998

Number of shared co-authors 0

Benno Schwikowski

Center for Bioinformatics, Institut Pasteur CNRS

Career Start Year 1997

Number of shared co-authors 0

Christopher T Workman

Technical University of Denmark

Career Start Year 1995

Number of shared co-authors 0

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 0

Ralf Zimmer

Ludwig-Maximilians-Universitat Munchen

Career Start Year 1995

Number of shared co-authors 0

Hideo Matsuda

Osaka University

Career Start Year 1994

Number of shared co-authors 0

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 1

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 0

Jason E McDermott

Pacific Northwest National Laboratory

Career Start Year 1993

Number of shared co-authors 1

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 0

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 0

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 0

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 0

Andreas Beyer

University of Cologne

Career Start Year 1991

Number of shared co-authors 0

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 2

Michael F Ochs

The College of New Jersey

Career Start Year 1988

Number of shared co-authors 1

Martin Kuiper

Norwegian University of Science and Technology

Career Start Year 1983

Number of shared co-authors 0

Joaqu??n Dopazo

Andalusian Public Foundation Progress and Health-FPS

Career Start Year 1977

Number of shared co-authors 0

row(s) 1 - 30 of 30

Michael A Langston

University of Tennessee

Co-authored papers 6

Donald C Wunsch

Missouri University of Science and Technology, USA National Science Foundation

Co-authored papers 4

Xiuzhen Huang

Cedars-Sinai Medical Center.

Co-authored papers 3

Jason H Moore

Cedars-Sinai Medical Center

Co-authored papers 3

Zhongming Zhao

Center for Precision Health, The University of Texas Health Science Center at Houston

Co-authored papers 3

Elissa J Chesler

Center for Systems Neurogenetics of Addiction at The Jackson Laboratory

Co-authored papers 3

Steven F Jennings

University of Arkansas at Little Rock

Co-authored papers 3

Gregory L Wheeler

Co-authored papers 2

Brynn H Voy

Co-authored papers 2

Mikhail G Dozmorov

Virginia Commonwealth University

Co-authored papers 2

ClarLynda Williams-DeVane

Department of Mathematics and Computer Science Fisk University

Co-authored papers 1

Ivan Rusyn

Co-authored papers 1

Lawrence E Hunter

University of Colorado School of Medicine

Co-authored papers 1

Weihua Guan

Pennsylvania State University, University Park

Co-authored papers 1

David W Threadgill

College Station

Co-authored papers 1

Donald F McMullen

Co-authored papers 1

Casey S Greene

Co-authored papers 1

James A Foster

University of Idaho

Co-authored papers 1

Susan M Bridges

Mississippi State University

Co-authored papers 1

Daniel M Gatti

Center for Computational Sciences

Co-authored papers 1

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 1

Robert W Williams

Mayo Clinic

Co-authored papers 1

Gordon K Springer

Co-authored papers 1

Lu Lu

University of Tennessee Health Science Center

Co-authored papers 1

Lisa A Branstetter

Co-authored papers 1

John E Mylroie