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Author Details

Stephan Preibisch
Howard Hughes Medical Institute
2005
37
22
PMIDPaper TitleJournal TitlePublished Year
36865282OME-Zarr: a cloud-optimized bioimaging file format with international community support.bioRxiv2023
37441157A scalable implementation of the recursive least-squares algorithm for training spiking neural networks.Front Neuroinform2023
36865282OME-Zarr: a cloud-optimized bioimaging file format with international community support.bioRxiv2023
37441157A scalable implementation of the recursive least-squares algorithm for training spiking neural networks.Front Neuroinform2023
34918745The histone H4 lysine 20 demethylase DPY-21 regulates the dynamics of condensin DC binding.J Cell Sci2022
35618955Best practice standards for circular RNA research.Nat Methods2022
36323665Cap-dependent translation initiation monitored in living cells.Nat Commun2022
36514066Long-term imaging reveals behavioral plasticity during C. elegans dauer exit.BMC Biol2022
34918745The histone H4 lysine 20 demethylase DPY-21 regulates the dynamics of condensin DC binding.J Cell Sci2022
35618955Best practice standards for circular RNA research.Nat Methods2022
36514066Long-term imaging reveals behavioral plasticity during C. elegans dauer exit.BMC Biol2022
36323665Cap-dependent translation initiation monitored in living cells.Nat Commun2022
33996223Dual-view light-sheet imaging through a tilted glass interface using a deformable mirror.Biomed Opt Express2021
33693580FRC-QE: a robust and comparable 3D microscopy image quality metric for cleared organoids.Bioinformatics2021
33996223Dual-view light-sheet imaging through a tilted glass interface using a deformable mirror.Biomed Opt Express2021
33693580FRC-QE: a robust and comparable 3D microscopy image quality metric for cleared organoids.Bioinformatics2021
33268361Regulatory encoding of quantitative variation in spatial activity of a <i>Drosophila</i> enhancer.Sci Adv2020
33268361Regulatory encoding of quantitative variation in spatial activity of a <i>Drosophila</i> enhancer.Sci Adv2020
30846705MTrack: Automated Detection, Tracking, and Analysis of Dynamic Microtubules.Sci Rep2019
31757849Resolving titin's lifecycle and the spatial organization of protein turnover in mouse cardiomyocytes.Proc Natl Acad Sci U S A2019
30862660Oscillations of MyoD and Hes1 proteins regulate the maintenance of activated muscle stem cells.Genes Dev2019
30846705MTrack: Automated Detection, Tracking, and Analysis of Dynamic Microtubules.Sci Rep2019
31384047BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples.Nat Methods2019
31757849Resolving titin's lifecycle and the spatial organization of protein turnover in mouse cardiomyocytes.Proc Natl Acad Sci U S A2019
31384047BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples.Nat Methods2019
30862660Oscillations of MyoD and Hes1 proteins regulate the maintenance of activated muscle stem cells.Genes Dev2019
29595475Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.Elife2018
30504888Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.Nat Methods2018
29595475Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.Elife2018
30504888Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.Nat Methods2018
27167079Using Light Sheet Fluorescence Microscopy to Image Zebrafish Eye Development.J Vis Exp2016
27167079Using Light Sheet Fluorescence Microscopy to Image Zebrafish Eye Development.J Vis Exp2016
26628585An automated workflow for parallel processing of large multiview SPIM recordings.Bioinformatics2016
26628585An automated workflow for parallel processing of large multiview SPIM recordings.Bioinformatics2016
26008747Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking.J Cell Biol2015
26008747Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking.J Cell Biol2015
26020499BigDataViewer: visualization and processing for large image data sets.Nat Methods2015
26020499BigDataViewer: visualization and processing for large image data sets.Nat Methods2015
24732429Bioimage Informatics in the context of Drosophila research.Methods2014
24747812Efficient Bayesian-based multiview deconvolution.Nat Methods2014
24732429Bioimage Informatics in the context of Drosophila research.Methods2014
24747812Efficient Bayesian-based multiview deconvolution.Nat Methods2014
23749304OpenSPIM: an open-access light-sheet microscopy platform.Nat Methods2013
23749304OpenSPIM: an open-access light-sheet microscopy platform.Nat Methods2013
22743772Fiji: an open-source platform for biological-image analysis.Nat Methods2012
22962343ImgLib2--generic image processing in Java.Bioinformatics2012
22743772Fiji: an open-source platform for biological-image analysis.Nat Methods2012
22723842TrakEM2 software for neural circuit reconstruction.PLoS One2012
22962343ImgLib2--generic image processing in Java.Bioinformatics2012
22723842TrakEM2 software for neural circuit reconstruction.PLoS One2012
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Collaborators

Stephan Saalfeld
Howard Hughes Medical Institute
Co-authored papers 8
Tobias Pietzsch
Howard Hughes Medical Institute
Co-authored papers 7
Robert H Singer
Albert Einstein College of Medicine
Co-authored papers 3
Kevin W Eliceiri
University of Wisconsin-Madison
Co-authored papers 2
Eugene W Myers
Max Planck Institute of Molecular Cell Biology and Genetics
Co-authored papers 2
Giovanni Palla
Institute of Computational Biology
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Prisca Liberali
Friedrich Miescher Institute for Biomedical Imaging
Co-authored papers 1
William Moore
University of Dundee
Co-authored papers 1
Mark Kittisopikul
Howard Hughes Medical Institute
Co-authored papers 1
Bugra ??zdemir
Signaling Research Centers CIBSS and BIOSS, University of Freiburg
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Petr Walczysko
University of Dundee
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Glencoe Software Inc.
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Khaled Mohamed
University of Dundee
Co-authored papers 1
Merlin Lange
Co-authored papers 1
Lucas Pelkmans
University of Zurich
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Oliver Stegle
Wellcome Sanger Institute
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S??bastien Besson
University of Dundee
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Ilan Gold
Harvard Medical School
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Mark S Keller
Harvard Medical School
Co-authored papers 1
Ayb??ke K??pc?? Yolda??
European Bioinformatics Institute
Co-authored papers 1
Daniel Toloudis
Allen Institute for Cell Science
Co-authored papers 1
Jeremy Maitin-Shepard
Google Research
Co-authored papers 1
Luca Marconato
Co-authored papers 1
Erin Weisbart
Broad Institute of MIT and Harvard
Co-authored papers 1
Jason R Swedlow
University of Dundee
Co-authored papers 1
Dave Horsfall
Biosciences Institute, Newcastle University
Co-authored papers 1
Christian Tischer
Center for Bioimage Analysis
Co-authored papers 1
Nathan Hotaling
National Center for Advancing Translational Sciences, National Institutes of Health
Co-authored papers 1
Erin E Diel
Glencoe Software Inc.
Co-authored papers 1
David L Corcoran
The University of North Carolina at Chapel Hill
Co-authored papers 1
Release 1.2