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Author Details

Haixu Tang
Indiana University
2000
148
41
Jake Y. Chen (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36802412GlycoSLASH: Concurrent Glycopeptide Identification from Multiple Related LC-MS/MS Data Sets by Using Spectral Clustering and Library Searching.J Proteome Res2023
36810564Non-Specific Signal Peptidase Processing of Extracellular Proteins in <i>Staphylococcus aureus</i> N315.Proteomes2023
36802412GlycoSLASH: Concurrent Glycopeptide Identification from Multiple Related LC-MS/MS Data Sets by Using Spectral Clustering and Library Searching.J Proteome Res2023
36810564Non-Specific Signal Peptidase Processing of Extracellular Proteins in <i>Staphylococcus aureus</i> N315.Proteomes2023
36289064Functional profile of host microbiome indicates <i>Clostridioides difficile</i> infection.Gut Microbes2022
35584271Locality-Sensitive Hashing-Based k-Mer Clustering for Identification of Differential Microbial Markers Related to Host Phenotype.J Comput Biol2022
36164820The evolving privacy and security concerns for genomic data analysis and sharing as observed from the iDASH competition.J Am Med Inform Assoc2022
36289064Functional profile of host microbiome indicates <i>Clostridioides difficile</i> infection.Gut Microbes2022
35776110A Reciprocal Best-hit Approach to Characterize Isomeric <i>N</i>-Glycans Using Tandem Mass Spectrometry.Anal Chem2022
35776110A Reciprocal Best-hit Approach to Characterize Isomeric <i>N</i>-Glycans Using Tandem Mass Spectrometry.Anal Chem2022
35584271Locality-Sensitive Hashing-Based k-Mer Clustering for Identification of Differential Microbial Markers Related to Host Phenotype.J Comput Biol2022
36164820The evolving privacy and security concerns for genomic data analysis and sharing as observed from the iDASH competition.J Am Med Inform Assoc2022
33139880Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics.Nat Microbiol2021
35919377Practical and Efficient in-Enclave Verification of Privacy Compliance.Proc (Int Conf Dependable Syst Netw)2021
35662807HySec-Flow: Privacy-Preserving Genomic Computing with SGX-based Big-Data Analytics Framework.IEEE Int Conf Cloud Comput2021
34010560GlycoHybridSeq: Automated Identification of N-Linked Glycopeptides Using Electron Transfer/High-Energy Collision Dissociation (EThcD).J Proteome Res2021
34211962GlycanGUI: Automated Glycan Annotation and Quantification Using Glucose Unit Index.Front Chem2021
34252973Haplotype-based membership inference from summary genomic data.Bioinformatics2021
33139880Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics.Nat Microbiol2021
35662807HySec-Flow: Privacy-Preserving Genomic Computing with SGX-based Big-Data Analytics Framework.IEEE Int Conf Cloud Comput2021
35919377Practical and Efficient in-Enclave Verification of Privacy Compliance.Proc (Int Conf Dependable Syst Netw)2021
34252973Haplotype-based membership inference from summary genomic data.Bioinformatics2021
34211962GlycanGUI: Automated Glycan Annotation and Quantification Using Glucose Unit Index.Front Chem2021
34010560GlycoHybridSeq: Automated Identification of N-Linked Glycopeptides Using Electron Transfer/High-Energy Collision Dissociation (EThcD).J Proteome Res2021
32388005New complexities of SOS-induced "untargeted" mutagenesis in Escherichia coli as revealed by mutation accumulation and whole-genome sequencing.DNA Repair (Amst)2020
31797643Navigating ethical quandaries with the privacy dilemma of biomedical datasets.Pac Symp Biocomput2020
32311007Overlap detection on long, error-prone sequencing reads via smooth q-gram.Bioinformatics2020
32415809A Fast and Memory-Efficient Spectral Library Search Algorithm Using Locality-Sensitive Hashing.Proteomics2020
32053352Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network.Anal Chem2020
32388005New complexities of SOS-induced "untargeted" mutagenesis in Escherichia coli as revealed by mutation accumulation and whole-genome sequencing.DNA Repair (Amst)2020
32693816iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching.BMC Med Genomics2020
33077707Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance.Nat Commun2020
32657380Privacy-preserving construction of generalized linear mixed model for biomedical computation.Bioinformatics2020
32053352Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network.Anal Chem2020
31797643Navigating ethical quandaries with the privacy dilemma of biomedical datasets.Pac Symp Biocomput2020
33077707Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance.Nat Commun2020
32693816iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching.BMC Med Genomics2020
32657380Privacy-preserving construction of generalized linear mixed model for biomedical computation.Bioinformatics2020
32311007Overlap detection on long, error-prone sequencing reads via smooth q-gram.Bioinformatics2020
32415809A Fast and Memory-Efficient Spectral Library Search Algorithm Using Locality-Sensitive Hashing.Proteomics2020
30511858msCRUSH: Fast Tandem Mass Spectral Clustering Using Locality Sensitive Hashing.J Proteome Res2019
32431959Algorithmic approaches to clonal reconstruction in heterogeneous cell populations.Quant Biol2019
31888455Clonal reconstruction from time course genomic sequencing data.BMC Genomics2019
30511858msCRUSH: Fast Tandem Mass Spectral Clustering Using Locality Sensitive Hashing.J Proteome Res2019
31142575A Meta-proteogenomic Approach to Peptide Identification Incorporating Assembly Uncertainty and Genomic Variation.Mol Cell Proteomics2019
30864339When Biology Gets Personal: Hidden Challenges of Privacy and Ethics in Biological Big Data.Pac Symp Biocomput2019
31266871The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes.mBio2019
30884002Identification of N-terminal protein processing sites by chemical labeling mass spectrometry.Rapid Commun Mass Spectrom2019
313560528-plex LC-MS/MS Analysis of Permethylated <i>N</i>-Glycans Achieved by Using Stable Isotopic Iodomethane.Anal Chem2019
31888455Clonal reconstruction from time course genomic sequencing data.BMC Genomics2019
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Collaborators

Predrag Radivojac
Indiana University
Co-authored papers 17
Xiaofeng Wang
Indiana University Bloomington
Co-authored papers 16
Heewook Lee
Arizona State University
Co-authored papers 14
Randy J Arnold
Indiana University
Co-authored papers 13
Xiaoqian Jiang
Carnegie Mellon University, The University of Texas Health Science Center at Houston, University of California San Diego
Co-authored papers 10
Pavel A Pevzner
University of California
Co-authored papers 10
Anoop Mayampurath
University of Wisconsin-Madison
Co-authored papers 10
Jeong-Hyeon Choi
National Marine Biodiversity Institute of Korea
Co-authored papers 8
Milos V Novotny
Co-authored papers 7
Ehwang Song
Co-authored papers 7
Lucila Ohno-Machado
Escola de Administracao de Empresas - FGV, Stanford University, University of California San Diego, University of Sao Paulo, Yale School of Medicine
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Indiana University Bloomington
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Co-authored papers 7
Douglas B Rusch
Center for Genomics and Bioinformatics, Indiana University
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Shanghai Putuo People's Hospital, Tongji University
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Yongan Zhao
Indiana University
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Rong Zeng
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John K Colbourne
University of Birmingham
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Lei Wang
Indiana University
Co-authored papers 5
Wenhao Wang
Institute of Information Engineering
Co-authored papers 4
Degui Zhi
University of Texas Health Science Center at Houston
Co-authored papers 4
Heidi J Sofia
National Human Genome Research Institute
Co-authored papers 4
Tim H-M Huang
University of Texas Health San Antonio (UTHSA)
Co-authored papers 3
Arif Harmanci
The University of Texas Health Science Center at Houston
Co-authored papers 3
Bradley A Malin
Vanderbilt University
Co-authored papers 3
Jacqueline A Lopez
University of Notre Dame
Co-authored papers 2
Robert L Moritz
Institute for Systems Biology
Co-authored papers 2
Dov Fox
University of San Diego School of Law
Co-authored papers 2
Amalio Telenti
Vir Biotechnology Inc.
Co-authored papers 2
Tsung-Ting Kuo
University of California San Diego
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Release 1.2