Author details

Full Name

James W MacDonald

Affiliation

University of Washington

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35868418	Placental transcriptomic signatures of spontaneous preterm birth.	Am J Obstet Gynecol	2023
35868418	Placental transcriptomic signatures of spontaneous preterm birth.	Am J Obstet Gynecol	2023
36689866	Placental transcriptomic signatures of prenatal exposure to Hydroxy-Polycyclic aromatic hydrocarbons.	Environ Int	2023
36929942	Genome-wide analyses characterize shared heritability among cancers and identify novel cancer susceptibility regions.	J Natl Cancer Inst	2023
36689866	Placental transcriptomic signatures of prenatal exposure to Hydroxy-Polycyclic aromatic hydrocarbons.	Environ Int	2023
36929942	Genome-wide analyses characterize shared heritability among cancers and identify novel cancer susceptibility regions.	J Natl Cancer Inst	2023
36198224	Symptomatic and asymptomatic domoic acid exposure in zebrafish (Danio rerio) revealed distinct non-overlapping gene expression patterns in the brain.	Aquat Toxicol	2022
36198224	Symptomatic and asymptomatic domoic acid exposure in zebrafish (Danio rerio) revealed distinct non-overlapping gene expression patterns in the brain.	Aquat Toxicol	2022
32974526	Evaluation of the RESIST-4 O.K.N.V immunochromatographic lateral flow assay for the rapid detection of OXA-48, KPC, NDM and VIM carbapenemases from cultured isolates.	Access Microbiol	2019
32974526	Evaluation of the RESIST-4 O.K.N.V immunochromatographic lateral flow assay for the rapid detection of OXA-48, KPC, NDM and VIM carbapenemases from cultured isolates.	Access Microbiol	2019
25633503	Orchestrating high-throughput genomic analysis with Bioconductor.	Nat Methods	2015
25633503	Orchestrating high-throughput genomic analysis with Bioconductor.	Nat Methods	2015
24257694	Whole-exome resequencing distinguishes cystic kidney diseases from phenocopies in renal ciliopathies.	Kidney Int	2014
24257694	Whole-exome resequencing distinguishes cystic kidney diseases from phenocopies in renal ciliopathies.	Kidney Int	2014
22072553	Identification and characterization of Hoxa9 binding sites in hematopoietic cells.	Blood	2012
22072553	Identification and characterization of Hoxa9 binding sites in hematopoietic cells.	Blood	2012
21828248	Candidate genes for panhypopituitarism identified by gene expression profiling.	Physiol Genomics	2011
21828248	Candidate genes for panhypopituitarism identified by gene expression profiling.	Physiol Genomics	2011
19797195	Identification of 11 novel mutations in eight BBS genes by high-resolution homozygosity mapping.	J Med Genet	2010
19797195	Identification of 11 novel mutations in eight BBS genes by high-resolution homozygosity mapping.	J Med Genet	2010
20835237	Candidate exome capture identifies mutation of SDCCAG8 as the cause of a retinal-renal ciliopathy.	Nat Genet	2010
20172850	Nineteen novel NPHS1 mutations in a worldwide cohort of patients with congenital nephrotic syndrome (CNS).	Nephrol Dial Transplant	2010
20835237	Candidate exome capture identifies mutation of SDCCAG8 as the cause of a retinal-renal ciliopathy.	Nat Genet	2010
20172850	Nineteen novel NPHS1 mutations in a worldwide cohort of patients with congenital nephrotic syndrome (CNS).	Nephrol Dial Transplant	2010
19165332	A systematic approach to mapping recessive disease genes in individuals from outbred populations.	PLoS Genet	2009
19407506	Genetics, gene expression and bioinformatics of the pituitary gland.	Horm Res	2009
19351907	Regulator of sex-limitation KRAB zinc finger proteins modulate sex-dependent and -independent liver metabolism.	Physiol Genomics	2009
19165332	A systematic approach to mapping recessive disease genes in individuals from outbred populations.	PLoS Genet	2009
19121383	Discovery of transcriptional regulators and signaling pathways in the developing pituitary gland by bioinformatic and genomic approaches.	Genomics	2009
19351907	Regulator of sex-limitation KRAB zinc finger proteins modulate sex-dependent and -independent liver metabolism.	Physiol Genomics	2009
19407506	Genetics, gene expression and bioinformatics of the pituitary gland.	Horm Res	2009
19121383	Discovery of transcriptional regulators and signaling pathways in the developing pituitary gland by bioinformatic and genomic approaches.	Genomics	2009
18572414	The inflammatory microenvironment of the aging prostate facilitates cellular proliferation and hypertrophy.	Cytokine	2008
18572414	The inflammatory microenvironment of the aging prostate facilitates cellular proliferation and hypertrophy.	Cytokine	2008
17297462	CDX2 promotes anchorage-independent growth by transcriptional repression of IGFBP-3.	Oncogene	2007
17631494	CXCL12 activates a robust transcriptional response in human prostate epithelial cells.	J Biol Chem	2007
17297462	CDX2 promotes anchorage-independent growth by transcriptional repression of IGFBP-3.	Oncogene	2007
17631494	CXCL12 activates a robust transcriptional response in human prostate epithelial cells.	J Biol Chem	2007
16388503	Prostate cancer cells regulate growth and differentiation of bone marrow endothelial cells through TGFbeta and its receptor, TGFbetaRII.	Prostate	2006
16794912	Age-related changes in cochlear gene expression in normal and shaker 2 mice.	J Assoc Res Otolaryngol	2006
16235240	Concordant copy number and transcriptional activity of genes mapping to derivative chromosomes 8 during cellular immortalization in vitro.	Genes Chromosomes Cancer	2006
16895932	COPA--cancer outlier profile analysis.	Bioinformatics	2006
16388503	Prostate cancer cells regulate growth and differentiation of bone marrow endothelial cells through TGFbeta and its receptor, TGFbetaRII.	Prostate	2006
16885343	Gene expression signatures for predicting prognosis of squamous cell and adenocarcinomas of the lung.	Cancer Res	2006
16794912	Age-related changes in cochlear gene expression in normal and shaker 2 mice.	J Assoc Res Otolaryngol	2006
16895932	COPA--cancer outlier profile analysis.	Bioinformatics	2006
16885343	Gene expression signatures for predicting prognosis of squamous cell and adenocarcinomas of the lung.	Cancer Res	2006
16235240	Concordant copy number and transcriptional activity of genes mapping to derivative chromosomes 8 during cellular immortalization in vitro.	Genes Chromosomes Cancer	2006
15705192	Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data.	BMC Bioinformatics	2005
15934929	Deafness-related plasticity in the inferior colliculus: gene expression profiling following removal of peripheral activity.	J Neurochem	2005

1 - 50 of 58

Mohammed Kanchwala

The University of Texas Southwestern Medical Center

Career Start Year 2016

Number of shared co-authors 0

Kathleen M Fisch

Center for Computational Biology and Bioinformatics, University of California

Career Start Year 2009

Number of shared co-authors 0

Jonathan E Bard

University at Buffalo

Career Start Year 2007

Number of shared co-authors 0

Yue Lu

The University of Texas MD Anderson Cancer Center

Career Start Year 2006

Number of shared co-authors 2

Matti Nykter

Prostate Cancer Research Center, Tampere University and Tays Cancer Center

Career Start Year 2006

Number of shared co-authors 2

Wayne Yu

Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University

Career Start Year 2005

Number of shared co-authors 3

Jianmin Wang

Roswell Park Comprehensive Cancer Center

Career Start Year 2003

Number of shared co-authors 1

Shintaro Katayama

Folkhalsan Research Center

Career Start Year 2003

Number of shared co-authors 3

Brigham H Mecham

Center for Cancer Innovation, University of Washington

Career Start Year 2003

Number of shared co-authors 0

Mikhail G Dozmorov

Virginia Commonwealth University

Career Start Year 2001

Number of shared co-authors 1

Peter White

The Ohio State University

Career Start Year 2000

Number of shared co-authors 1

David K Crossman

University of Alabama at Birmingham

Career Start Year 2000

Number of shared co-authors 1

Yan W Asmann

Mayo Clinic

Career Start Year 2000

Number of shared co-authors 5

Braden Boone

HudsonAlpha Institute for Biotechnology

Career Start Year 1999

Number of shared co-authors 1

Rakesh Nagarajan

Current or past members of the College of American Pathologists

Career Start Year 1999

Number of shared co-authors 0

Benedikt Brors

German Cancer Research Center (DKFZ)

Career Start Year 1997

Number of shared co-authors 6

Dongquan Chen

University of Alabama at Birmingham

Career Start Year 1997

Number of shared co-authors 0

Clifton L Dalgard

Uniformed Services University of the Health Sciences

Career Start Year 1997

Number of shared co-authors 1

Shannon K McWeeney

Oregon Health & Science University, University of California Berkeley

Career Start Year 1997

Number of shared co-authors 4

Agnes Viale

Memorial Sloan Kettering Cancer Center

Career Start Year 1996

Number of shared co-authors 6

Gary Hardiman

Institute for Global Food Security, Queen's University Belfast

Career Start Year 1994

Number of shared co-authors 0

Alistair R R Forrest

RIKEN Center for Integrative Medical Sciences

Career Start Year 1994

Number of shared co-authors 4

Marco A Marra

University of British Columbia

Career Start Year 1993

Number of shared co-authors 12

Samuel Aparicio

University of British Columbia

Career Start Year 1993

Number of shared co-authors 6

Abdel G Elkahloun

National Human Genome Research Institute

Career Start Year 1990

Number of shared co-authors 2

Sean M Grimmond

The University of Melbourne

Career Start Year 1990

Number of shared co-authors 7

Luigi Marchionni

Weill-Cornell School of Medicine

Career Start Year 1989

Number of shared co-authors 4

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 15

Bruce J Aronow

Cincinnati Children's Hospital Medical Center

Career Start Year 1975

Number of shared co-authors 2

Paul C Boutros

University of California los angeles

Career Start Year 1970

Number of shared co-authors 10

row(s) 1 - 30 of 30

Friedhelm Hildebrandt

Boston Children's Hospital

Co-authored papers 5

Nicholas Katsanis

Northwestern University

Co-authored papers 3

John F O'Toole

Cleveland Clinic

Co-authored papers 2

Kaja Z LeWinn

Co-authored papers 2

Nicole R Bush

Co-authored papers 2

Yoshihide Hayashizaki

Center for Integrative Medical Sciences

Co-authored papers 2

Shawn Levy

HudsonAlpha Institute for Biotechnology

Co-authored papers 2

Sheela Sathyanarayana

Co-authored papers 2

Piero Carninci

RIKEN Center for Integrative Medical Sciences

Co-authored papers 2

Jeremy A Squire

University of Sao Paulo

Co-authored papers 2

Philip L Beales

UCL Great Ormond Street Institute of Child Health, University College London

Co-authored papers 1

Alejandro Reyes

Dana-Farber Cancer Institute

Co-authored papers 1

Thomas Girke

Institute for Integrative Genome Biology, University of California Riverside

Co-authored papers 1

Michael Lawrence

Center for Cancer Research, Massachusetts General Hospital, Harvard Medical School

Co-authored papers 1

Martin Zenker

Co-authored papers 1

H??l??ne Dollfus

Institut de Genetique Medicale d'Alsace, Hopitaux Universitaires de Strasbourg

Co-authored papers 1

Paul Shannon

Institute for Systems Biology

Co-authored papers 1

Janusz Jankowski

Co-authored papers 1

Raphael Gottardo

Fred Hutchinson Cancer Center

Co-authored papers 1

Loic Le Marchand

Co-authored papers 1

Stephen J Chanock

National Cancer Institute, National Institutes of Health

Co-authored papers 1

Grace Lee

Bowdoin College

Co-authored papers 1

Martin Morgan

Roswell Park Comprehensive Cancer Center

Co-authored papers 1

Marc Carlson

Fred Hutchinson Cancer Research Center

Co-authored papers 1

Thomas J Giordano

University of Michigan ann arbor

Co-authored papers 1

Steven J M Jones

University of British Columbia

Co-authored papers 1

Detlef Bockenhauer

Great Ormond Street Hospital for Children, NHS Foundation Trust

Co-authored papers 1

H??lya Kayserili

Istanbul University

Co-authored papers 1

Levi Waldron

City University of New York School of Public Health

Co-authored papers 1

Christopher I Amos

Baylor College of Medicine

Co-authored papers 1

1 - 30

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