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Author Details

Elizabeth Tseng
University of Washington
2014
37
19
Gloria M Sheynkman (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36598648Structure and Alternative Splicing of the Antisense FMR1 (ASFMR1) Gene.Mol Neurobiol2023
37095564Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data.Genome Biol2023
36999049RNA-seq data science: From raw data to effective interpretation.Front Genet2023
37398077SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms.bioRxiv2023
36915055Long read isoform sequencing reveals hidden transcriptional complexity between cattle subspecies.BMC Genomics2023
34980911Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities.Nat Biotechnol2022
36536032Alternative splicing and genetic variation of mhc-e: implications for rhesus cytomegalovirus-based vaccines.Commun Biol2022
35100340Long-read isoform sequencing reveals tissue-specific isoform expression between active and hibernating brown bears (Ursus arctos).G3 (Bethesda)2022
34109759An anchored chromosome-scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids.Plant Genome2021
34788620Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing.Cell Rep2021
313819775'UTR-mediated regulation of Ataxin-1 expression.Neurobiol Dis2020
32071408Variant phasing and haplotypic expression from long-read sequencing in maize.Commun Biol2020
32709858Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato.Sci Data2020
32350247Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle.Nat Commun2020
32376650Systematic Profiling of Full-Length Ig and TCR Repertoire Diversity in Rhesus Macaque through Long Read Transcriptome Sequencing.J Immunol2020
32393825ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms.Nat Commun2020
32191811De novo assembly of the cattle reference genome with single-molecule sequencing.Gigascience2020
30816928SpaRC: scalable sequence clustering using Apache Spark.Bioinformatics2019
31243274Long-read sequencing unveils IGH-DUX4 translocation into the silenced IGH allele in B-cell acute lymphoblastic leukemia.Nat Commun2019
31338105The Landscape of <i>SNCA</i> Transcripts Across Synucleinopathies: New Insights From Long Reads Sequencing Analysis.Front Genet2019
31112421Targeted Long-Read RNA Sequencing Demonstrates Transcriptional Diversity Driven by Splice-Site Variation in MYBPC3.Circ Genom Precis Med2019
30934798Single-Molecule Real-Time (SMRT) Full-Length RNA-Sequencing Reveals Novel and Distinct mRNA Isoforms in Human Bone Marrow Cell Subpopulations.Genes (Basel)2019
29396323Universal Alternative Splicing of Noncoding Exons.Cell Syst2018
30228200Transcriptional fates of human-specific segmental duplications in brain.Genome Res2018
29954844Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line.Genome Res2018
29618047Single-molecule, full-length transcript sequencing provides insight into the extreme metabolism of the ruby-throated hummingbird Archilochus colubris.Gigascience2018
29712755A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing.Genome Res2018
29598823Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing.Genome Biol2018
28888471Altered expression of the FMR1 splicing variants landscape in premutation carriers.Biochim Biophys Acta Gene Regul Mech2017
28438136Normalized long read RNA sequencing in chicken reveals transcriptome complexity similar to human.BMC Genomics2017
28328508HapIso: An Accurate Method for the Haplotype- Specific Isoforms Reconstruction From Long Single-Molecule Reads.IEEE Trans Nanobioscience2017
28473535Androgen Receptor Variant AR-V9 Is Coexpressed with AR-V7 in Prostate Cancer Metastases and Predicts Abiraterone Resistance.Clin Cancer Res2017
27339440Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing.Nat Commun2016
25542830Enterolignan-producing phenotypes are associated with increased gut microbial diversity and altered composition in premenopausal women in the United States.Cancer Epidemiol Biomarkers Prev2015
26177194Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing.PLoS One2015
26040699Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing.Nucleic Acids Res2015
24736250Long-read sequencing of chicken transcripts and identification of new transcript isoforms.PLoS One2014
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Collaborators

Gloria M Sheynkman (CM4AI)
University of Virginia
Co-authored papers 4
Doreen Ware
USDA ARS NAA Robert W. Holley Center for Agriculture and Health
Co-authored papers 3
Fran??oise Thibaud-Nissen
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 2
Sergey Koren
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 2
Serghei Mangul
School of Pharmacy, University of Southern California
Co-authored papers 2
Zhong Wang
US Department of Energy, Joint Genome Institute
Co-authored papers 2
Tyler H Garvin
Co-authored papers 2
Michael C Schatz
Johns Hopkins University
Co-authored papers 2
Eleazar Eskin
Co-authored papers 2
Louis J Picker
Vaccine and Gene Therapy Institute, Oregon Health & Science University
Co-authored papers 2
Adam M Phillippy
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 2
Robert Sebra
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Michael Gale
Center for Innate Immunity and Immune Disease, University of Washington
Co-authored papers 2
Euan A Ashley
Stanford University
Co-authored papers 2
Evan E Eichler
University of Washington
Co-authored papers 1
Pavel A Pevzner
University of California
Co-authored papers 1
Jonathan P Davies
University of Exeter
Co-authored papers 1
Erin D Jeffery
Agenus Inc, American Society for Mass Spectrometry, Hartwick College, Human Proteome Organisation, Large Scale Biology Corp, University of Virginia
Co-authored papers 1
Emma L Dempster
University of Exeter Medical School, University of Exeter
Co-authored papers 1
Katherine M Newton
Kaiser Permanente Washington Health Research Institute
Co-authored papers 1
James Hicks
Michelson Center for Convergent Bioscience, University of Southern California
Co-authored papers 1
Farhad Hormozdiari
Co-authored papers 1
Garrett T Graham
Co-authored papers 1
Brunilda Balliu
Co-authored papers 1
Nicholas J Bray
Division of Psychological Medicine & Clinical Neurosciences, Cardiff University
Co-authored papers 1
Brian A Costello
The Mayo Clinic
Co-authored papers 1
Timothy Beck
Human Longevity Inc.
Co-authored papers 1
Darren E Hagen
Oklahoma State University
Co-authored papers 1
Tim R Mercer
Australian Institute for Bioengineering and Nanotechnology, University of Queensland
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Peter A C 't Hoen
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