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Author Details

Hideo Matsuda
Osaka University
1994
78
21
PMIDPaper TitleJournal TitlePublished Year
37989470Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach.Biosystems2024
37989470Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach.Biosystems2024
36198906Myeloid cell-specific ablation of Runx2 gene exacerbates post-infarct cardiac remodeling.Sci Rep2022
35902094MPP6 stimulates both RRP6 and DIS3 to degrade a specified subset of MTR4-sensitive substrates in the human nucleus.Nucleic Acids Res2022
36198906Myeloid cell-specific ablation of Runx2 gene exacerbates post-infarct cardiac remodeling.Sci Rep2022
35468686Detection of Biomarkers for Epithelial-Mesenchymal Transition with Single-Cell Trajectory Inference.Front Biosci (Landmark Ed)2022
35468686Detection of Biomarkers for Epithelial-Mesenchymal Transition with Single-Cell Trajectory Inference.Front Biosci (Landmark Ed)2022
35902094MPP6 stimulates both RRP6 and DIS3 to degrade a specified subset of MTR4-sensitive substrates in the human nucleus.Nucleic Acids Res2022
33340887Determining homologous recombination deficiency scores with whole exome sequencing and their association with responses to neoadjuvant chemotherapy in breast cancer.Transl Oncol2021
33837198SLPI is a critical mediator that controls PTH-induced bone formation.Nat Commun2021
33340887Determining homologous recombination deficiency scores with whole exome sequencing and their association with responses to neoadjuvant chemotherapy in breast cancer.Transl Oncol2021
34661337Osteoclasts adapt to physioxia perturbation through DNA demethylation.EMBO Rep2021
34532161SC-JNMF: single-cell clustering integrating multiple quantification methods based on joint non-negative matrix factorization.PeerJ2021
33837198SLPI is a critical mediator that controls PTH-induced bone formation.Nat Commun2021
34661337Osteoclasts adapt to physioxia perturbation through DNA demethylation.EMBO Rep2021
34532161SC-JNMF: single-cell clustering integrating multiple quantification methods based on joint non-negative matrix factorization.PeerJ2021
31601163Long non-coding RNA 2310069B03Rik functions as a suppressor of Ucp1 expression under prolonged cold exposure in murine beige adipocytes.Biosci Biotechnol Biochem2020
31601163Long non-coding RNA 2310069B03Rik functions as a suppressor of Ucp1 expression under prolonged cold exposure in murine beige adipocytes.Biosci Biotechnol Biochem2020
32179857In vivo dynamic analysis of BMP-2-induced ectopic bone formation.Sci Rep2020
32122774Thrombomodulin induces anti-inflammatory effects by inhibiting the rolling adhesion of leukocytes in vivo.J Pharmacol Sci2020
32281228Anti-Inflammatory and Antioxidative Properties of Isoflavones Provide Renal Protective Effects Distinct from Those of Dietary Soy Proteins against Diabetic Nephropathy.Mol Nutr Food Res2020
32273338Glycerol kinase stimulates uncoupling protein 1 expression by regulating fatty acid metabolism in beige adipocytes.J Biol Chem2020
31917363URH49 exports mRNA by remodeling complex formation and mediating the NXF1-dependent pathway.Biochim Biophys Acta Gene Regul Mech2020
31917363URH49 exports mRNA by remodeling complex formation and mediating the NXF1-dependent pathway.Biochim Biophys Acta Gene Regul Mech2020
32122774Thrombomodulin induces anti-inflammatory effects by inhibiting the rolling adhesion of leukocytes in vivo.J Pharmacol Sci2020
32281228Anti-Inflammatory and Antioxidative Properties of Isoflavones Provide Renal Protective Effects Distinct from Those of Dietary Soy Proteins against Diabetic Nephropathy.Mol Nutr Food Res2020
32179857In vivo dynamic analysis of BMP-2-induced ectopic bone formation.Sci Rep2020
32273338Glycerol kinase stimulates uncoupling protein 1 expression by regulating fatty acid metabolism in beige adipocytes.J Biol Chem2020
31288642Improvement of detection performance of fusion genes from RNA-seq data by clustering short reads.J Bioinform Comput Biol2019
29994156Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm.IEEE/ACM Trans Comput Biol Bioinform2019
31288642Improvement of detection performance of fusion genes from RNA-seq data by clustering short reads.J Bioinform Comput Biol2019
31263765<i>In Vivo</i> Multicolor Imaging with Fluorescent Probes Revealed the Dynamics and Function of Osteoclast Proton Pumps.ACS Cent Sci2019
29994156Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm.IEEE/ACM Trans Comput Biol Bioinform2019
31263765<i>In Vivo</i> Multicolor Imaging with Fluorescent Probes Revealed the Dynamics and Function of Osteoclast Proton Pumps.ACS Cent Sci2019
29352112Direct cell-cell contact between mature osteoblasts and osteoclasts dynamically controls their functions in vivo.Nat Commun2018
30410858The dipeptidyl peptidase-4 (DPP-4) inhibitor teneligliptin enhances brown adipose tissue function, thereby preventing obesity in mice.FEBS Open Bio2018
29352112Direct cell-cell contact between mature osteoblasts and osteoclasts dynamically controls their functions in vivo.Nat Commun2018
29760402Roles of Enhancer RNAs in RANKL-induced Osteoclast Differentiation Identified by Genome-wide Cap-analysis of Gene Expression using CRISPR/Cas9.Sci Rep2018
29745848Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells.BMC Bioinformatics2018
30410858The dipeptidyl peptidase-4 (DPP-4) inhibitor teneligliptin enhances brown adipose tissue function, thereby preventing obesity in mice.FEBS Open Bio2018
29745848Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells.BMC Bioinformatics2018
29760402Roles of Enhancer RNAs in RANKL-induced Osteoclast Differentiation Identified by Genome-wide Cap-analysis of Gene Expression using CRISPR/Cas9.Sci Rep2018
28919422Over-expression of PPARα in obese mice adipose tissue improves insulin sensitivity.Biochem Biophys Res Commun2017
28404815The hepatokine FGF21 is crucial for peroxisome proliferator-activated receptor-α agonist-induced amelioration of metabolic disorders in obese mice.J Biol Chem2017
28363869A simple comparison of the extrinsic noise in gene expression between native and foreign regulations in Escherichia coli.Biochem Biophys Res Commun2017
28877645Bone marrow cavity segmentation using graph-cuts with wavelet-based texture feature.J Bioinform Comput Biol2017
28919422Over-expression of PPARα in obese mice adipose tissue improves insulin sensitivity.Biochem Biophys Res Commun2017
29234806Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer.JAMA2017
28363869A simple comparison of the extrinsic noise in gene expression between native and foreign regulations in Escherichia coli.Biochem Biophys Res Commun2017
28404815The hepatokine FGF21 is crucial for peroxisome proliferator-activated receptor-α agonist-induced amelioration of metabolic disorders in obese mice.J Biol Chem2017
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Collaborators

Shigeto Seno
Osaka University
Co-authored papers 44
Yoichi Takenaka
Kansai University
Co-authored papers 19
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 10
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 8
Hidemasa Bono
Hiroshima University
Co-authored papers 8
Yasushi Okazaki
Intractable Disease Research Center, Graduate School of Medicine, Juntendo University
Co-authored papers 8
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Christian Schönbach
Co-authored papers 7
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Takashi Gojobori
Co-authored papers 6
John Quackenbush
Harvard T. H. Chan School of Public Health
Co-authored papers 6
Masaaki Furuno
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Takahiro Arakawa
Tokyo University of Technology
Co-authored papers 5
Julian Gough
Medical Research Council Laboratory of Molecular Biology
Co-authored papers 5
Alexander Kanapin
Co-authored papers 5
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 5
Rohan D Teasdale
The University of Queensland
Co-authored papers 4
Laurens G Wilming
Co-authored papers 4
Serge Batalov
Co-authored papers 4
Shiro Fukuda
Graduate School of Medicine, Osaka University
Co-authored papers 4
Nikolai Petrovsky
Co-authored papers 4
David P Hill
Co-authored papers 4
Shinji Kondo
Co-authored papers 4
Boris Lenhard
MRC London Institute of Medical Sciences
Co-authored papers 4
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Carol J Bult
The Jackson Laboratory Cancer Center
Co-authored papers 4
Sean M Grimmond
The University of Melbourne
Co-authored papers 4
Lynn M Schriml
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 3
Kazuhiro Shibata
Co-authored papers 3
Release 1.2