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Author Details

Hannes Braberg
University of California San Francisco
2004
30
20
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35298864Integrative structure determination of histones H3 and H4 using genetic interactions.FEBS J2023
37758692Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets.Nat Commun2023
35332335Publisher Correction: Evolution of enhanced innate immune evasion by SARS-CoV-2.Nature2022
35013567From systems to structure - using genetic data to model protein structures.Nat Rev Genet2022
34942634Evolution of enhanced innate immune evasion by SARS-CoV-2.Nature2022
34127972Evolution of enhanced innate immune evasion by the SARS-CoV-2 B.1.1.7 UK variant.bioRxiv2021
34646016Systems-level effects of allosteric perturbations to a model molecular switch.Nature2021
34019789Chemical-genetic interrogation of RNA polymerase mutants reveals structure-function relationships and physiological tradeoffs.Mol Cell2021
32353859A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.Nature2020
33060197Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.Science2020
33303586Genetic interaction mapping informs integrative structure determination of protein complexes.Science2020
30547882Genetic analysis reveals functions of atypical polyubiquitin chains.Elife2018
27001511Nonsense-mediated decay regulates key components of homologous recombination.Nucleic Acids Res2016
24717535Adventures in time and space: splicing efficiency and RNA polymerase II elongation rate.RNA Biol2014
25010907Quantitative analysis of triple-mutant genetic interactions.Nat Protoc2014
24842270Genetic interaction analysis of point mutations enables interrogation of gene function at a residue-level resolution: exploring the applications of high-resolution genetic interaction mapping of point mutations.Bioessays2014
23746449Systematic triple-mutant analysis uncovers functional connectivity between pathways involved in chromosome regulation.Cell Rep2013
23891562A lipid E-MAP identifies Ubx2 as a critical regulator of lipid saturation and lipid bilayer stress.Mol Cell2013
23932120From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II.Cell2013
22157004RNA polymerase II carboxyl-terminal domain phosphorylation regulates protein stability of the Set2 methyltransferase and histone H3 di- and trimethylation at lysine 36.J Biol Chem2012
22618536SALIGN: a web server for alignment of multiple protein sequences and structures.Bioinformatics2012
21097780ModBase, a database of annotated comparative protein structure models, and associated resources.Nucleic Acids Res2011
20526336A plasma-membrane E-MAP reveals links of the eisosome with sphingolipid metabolism and endosomal trafficking.Nat Struct Mol Biol2010
20952395Individual lysine acetylations on the N terminus of Saccharomyces cerevisiae H2A.Z are highly but not differentially regulated.J Biol Chem2010
19269370Functional organization of the S. cerevisiae phosphorylation network.Cell2009
19061648A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing.Mol Cell2008
19160513High-throughput, quantitative analyses of genetic interactions in E. coli.Nat Methods2008
16381869MODBASE: a database of annotated comparative protein structure models and associated resources.Nucleic Acids Res2006
16738133Protein complex compositions predicted by structural similarity.Nucleic Acids Res2006
14681398MODBASE, a database of annotated comparative protein structure models, and associated resources.Nucleic Acids Res2004
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Collaborators

Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 25
Michael Shales
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 12
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 10
Kevan M Shokat
University of California San Francisco
Co-authored papers 7
Danielle L Swaney
J. David Gladstone Institutes
Co-authored papers 7
Jiewei Xu
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 6
Mehdi Bouhaddou
J. David Gladstone Institutes
Co-authored papers 6
Margaret Soucheray
J. David Gladstone Institutes
Co-authored papers 6
Jyoti Batra
J. David Gladstone Institutes
Co-authored papers 6
Danish Memon
European Bioinformatics Institute
Co-authored papers 5
Ursula Pieper
University of California san francisco
Co-authored papers 5
Pedro Beltrao
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 5
Natalia Jura
Cardiovascular Research Institute, University of California San Francisco
Co-authored papers 5
Joseph B Hiatt
Fred Hutchinson Cancer Center
Co-authored papers 5
Adolfo Garc??a-Sastre
Icahn School of Medicine at Mount Sinai
Co-authored papers 5
Kliment A Verba
University of California, University of California San Francisco
Co-authored papers 5
Kirsten Obernier (CM4AI)
University of California San Francisco
Co-authored papers 5
Kris M White
Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)
Co-authored papers 5
Robyn M Kaake
J. David Gladstone Institutes
Co-authored papers 5
Mallur S Madhusudhan
Indian Institute of Science Education and Research Pune
Co-authored papers 5
Christine Guthrie
University of California san francisco
Co-authored papers 4
Manisha Ummadi
University of California, San Francisco
Co-authored papers 4
Lorena Zuliani-Alvarez
J. David Gladstone Institutes
Co-authored papers 4
James S Fraser
University of California san francisco
Co-authored papers 4
Benjamin Webb
University of California san francisco
Co-authored papers 4
Alicia L Richards
University of Wisconsin-Madison
Co-authored papers 4
Shuyi Wang
Fudan University
Co-authored papers 3
Myra Hosmillo
University of Cambridge
Co-authored papers 3
Sean R Collins
University of California davis
Co-authored papers 3
Mahdad Noursadeghi
University College London
Co-authored papers 3
Release 1.2