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Author Details

Lee Ann McCue
Pacific Northwest National Laboratory
1991
66
26
PMIDPaper TitleJournal TitlePublished Year
37523489<i>IsoMatchMS</i>: Open-Source Software for Automated Annotation and Visualization of High Resolution MALDI-MS Spectra.J Am Soc Mass Spectrom2023
38085827PMart Web Application: Marketplace for Interactive Analysis of Panomics Data.J Proteome Res2023
37523489<i>IsoMatchMS</i>: Open-Source Software for Automated Annotation and Visualization of High Resolution MALDI-MS Spectra.J Am Soc Mass Spectrom2023
38085827PMart Web Application: Marketplace for Interactive Analysis of Panomics Data.J Proteome Res2023
36014071Soil Metabolomics Predict Microbial Taxa as Biomarkers of Moisture Status in Soils from a Tidal Wetland.Microorganisms2022
36303775Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.Front Bioinform2022
36014071Soil Metabolomics Predict Microbial Taxa as Biomarkers of Moisture Status in Soils from a Tidal Wetland.Microorganisms2022
36303775Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.Front Bioinform2022
33947809Correction for Vangay et al., "Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities".mSystems2021
33590907Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) peak intensity normalization for complex mixture analyses.Rapid Commun Mass Spectrom2021
33622857Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities.mSystems2021
33947809Correction for Vangay et al., "Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities".mSystems2021
33661636PSpecteR: A User-Friendly and Interactive Application for Visualizing Top-Down and Bottom-Up Proteomics Data in R.J Proteome Res2021
33869975Quantum Mechanical Methods Predict Accurate Thermodynamics of Biochemical Reactions.ACS Omega2021
33622857Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities.mSystems2021
33869975Quantum Mechanical Methods Predict Accurate Thermodynamics of Biochemical Reactions.ACS Omega2021
33590907Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) peak intensity normalization for complex mixture analyses.Rapid Commun Mass Spectrom2021
33661636PSpecteR: A User-Friendly and Interactive Application for Visualizing Top-Down and Bottom-Up Proteomics Data in R.J Proteome Res2021
32350400The National Microbiome Data Collaborative: enabling microbiome science.Nat Rev Microbiol2020
32176690ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data.PLoS Comput Biol2020
32350400The National Microbiome Data Collaborative: enabling microbiome science.Nat Rev Microbiol2020
32571209ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.BMC Bioinformatics2020
32571209ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.BMC Bioinformatics2020
32176690ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data.PLoS Comput Biol2020
30638385pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data.J Proteome Res2019
31830917Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis.BMC Genomics2019
30638385pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data.J Proteome Res2019
31186334Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations.mSystems2019
31830917Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis.BMC Genomics2019
31186334Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations.mSystems2019
30289885Identification of metabolite and protein explanatory variables governing microbiome establishment and re-establishment within a cellulose-degrading anaerobic bioreactor.PLoS One2018
30289885Identification of metabolite and protein explanatory variables governing microbiome establishment and re-establishment within a cellulose-degrading anaerobic bioreactor.PLoS One2018
28605449FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool.Bioinformatics2017
28605449FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool.Bioinformatics2017
28782284Factors affecting the bacterial community composition and heterotrophic production of Columbia River estuarine turbidity maxima.Microbiologyopen2017
28782284Factors affecting the bacterial community composition and heterotrophic production of Columbia River estuarine turbidity maxima.Microbiologyopen2017
26934712Soil Respiration and Bacterial Structure and Function after 17 Years of a Reciprocal Soil Transplant Experiment.PLoS One2016
26934712Soil Respiration and Bacterial Structure and Function after 17 Years of a Reciprocal Soil Transplant Experiment.PLoS One2016
27568004Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002.Nucleic Acids Res2016
27568004Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002.Nucleic Acids Res2016
24846609Proteomic profiles of five strains of oxygenic photosynthetic cyanobacteria of the genus Cyanothece.J Proteome Res2014
24846609Proteomic profiles of five strains of oxygenic photosynthetic cyanobacteria of the genus Cyanothece.J Proteome Res2014
23151644Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park.ISME J2013
23956303SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes.Bioinformatics2013
23151644Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park.ISME J2013
23313599Fusion of laboratory and textual data for investigative bioforensics.Forensic Sci Int2013
23472107Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.PLoS One2013
23719152Linking microbial community structure to β-glucosidic function in soil aggregates.ISME J2013
23956303SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes.Bioinformatics2013
23719152Linking microbial community structure to β-glucosidic function in soil aggregates.ISME J2013
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Collaborators

Co-authored papers 9
Pacific Northwest National Laboratory
Co-authored papers 7
Pacific Northwest National Laboratory
Co-authored papers 7
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
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US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 4
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University of Florida
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International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
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Los Alamos National Laboratory
Co-authored papers 4
Pacific Northwest National Laboratory
Co-authored papers 4
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Pacific Northwest National Laboratory
Co-authored papers 4
Pacific Northwest National Laboratory
Co-authored papers 3
Los Alamos National Laboratory
Co-authored papers 3
Institute for Environmental Genomics, University of Oklahoma
Co-authored papers 3
Pacific Northwest National Laboratory
Co-authored papers 3
Lawrence Berkeley National Laboratory
Co-authored papers 3
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 3
Pacific Northwest National Laboratory
Co-authored papers 3
University of Minnesota
Co-authored papers 3
Oak Ridge National Laboratory
Co-authored papers 3
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 2
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University of Minnesota
Co-authored papers 2
Los Alamos National Laboratory
Co-authored papers 2
The University of Arizona
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Pacific Northwest National Laboratory
Co-authored papers 2
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
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Lawrence Berkeley National Laboratory
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