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Author Details
Full Name
Jimmy K Eng
Affiliation
University of Washington
ORCID
Career Start Year
1994
Papers
145
H Index
69
Expertise
CM4AI Collaborator
Trey Ideker (CM4AI)
PMID
Paper Title
Journal Title
Published Year
36598107
The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data.
J Proteome Res
2023
36648445
Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite.
J Proteome Res
2023
36598107
The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data.
J Proteome Res
2023
36648445
Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite.
J Proteome Res
2023
36306373
Coisolation of Peptide Pairs for Peptide Identification and MS/MS-Based Quantification.
Anal Chem
2022
36306373
Coisolation of Peptide Pairs for Peptide Identification and MS/MS-Based Quantification.
Anal Chem
2022
32126768
Full-Featured, Real-Time Database Searching Platform Enables Fast and Accurate Multiplexed Quantitative Proteomics.
J Proteome Res
2020
32126768
Full-Featured, Real-Time Database Searching Platform Enables Fast and Accurate Multiplexed Quantitative Proteomics.
J Proteome Res
2020
32106352
Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format.
Proteomics
2020
32031408
In Vivo Cross-Linking MS Reveals Conservation in OmpA Linkage to Different Classes of β-Lactamase Enzymes.
J Am Soc Mass Spectrom
2020
32545216
Systemic Proteome Alterations Linked to Early Stage Pancreatic Cancer in Diabetic Patients.
Cancers (Basel)
2020
32031408
In Vivo Cross-Linking MS Reveals Conservation in OmpA Linkage to Different Classes of β-Lactamase Enzymes.
J Am Soc Mass Spectrom
2020
32106352
Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format.
Proteomics
2020
32545216
Systemic Proteome Alterations Linked to Early Stage Pancreatic Cancer in Diabetic Patients.
Cancers (Basel)
2020
30520642
Tools for 3D Interactome Visualization.
J Proteome Res
2019
30523691
A Tandem Mass Spectrometry Sequence Database Search Method for Identification of O-Fucosylated Proteins by Mass Spectrometry.
J Proteome Res
2019
30520642
Tools for 3D Interactome Visualization.
J Proteome Res
2019
31081335
Proteomics Standards Initiative Extended FASTA Format.
J Proteome Res
2019
31060355
In Vivo Proteome of Pseudomonas aeruginosa in Airways of Cystic Fibrosis Patients.
J Proteome Res
2019
31346328
Predictive proteomic signatures for response of pancreatic cancer patients receiving chemotherapy.
Clin Proteomics
2019
31346328
Predictive proteomic signatures for response of pancreatic cancer patients receiving chemotherapy.
Clin Proteomics
2019
31060355
In Vivo Proteome of Pseudomonas aeruginosa in Airways of Cystic Fibrosis Patients.
J Proteome Res
2019
31081335
Proteomics Standards Initiative Extended FASTA Format.
J Proteome Res
2019
30523691
A Tandem Mass Spectrometry Sequence Database Search Method for Identification of O-Fucosylated Proteins by Mass Spectrometry.
J Proteome Res
2019
29028897
Sipros Ensemble improves database searching and filtering for complex metaproteomics.
Bioinformatics
2018
29028897
Sipros Ensemble improves database searching and filtering for complex metaproteomics.
Bioinformatics
2018
30343895
Bifunctional Immunity Proteins Protect Bacteria against FtsZ-Targeting ADP-Ribosylating Toxins.
Cell
2018
29676898
Mango: A General Tool for Collision Induced Dissociation-Cleavable Cross-Linked Peptide Identification.
Anal Chem
2018
30343895
Bifunctional Immunity Proteins Protect Bacteria against FtsZ-Targeting ADP-Ribosylating Toxins.
Cell
2018
29676898
Mango: A General Tool for Collision Induced Dissociation-Cleavable Cross-Linked Peptide Identification.
Anal Chem
2018
27995795
Quantitative Proteomics Based on Optimized Data-Independent Acquisition in Plasma Analysis.
J Proteome Res
2017
28814519
Extracellular Matrix Proteins Mediate HIV-1 gp120 Interactions with α<sub>4</sub>β<sub>7</sub>.
J Virol
2017
27995795
Quantitative Proteomics Based on Optimized Data-Independent Acquisition in Plasma Analysis.
J Proteome Res
2017
28152603
Large-Scale and Targeted Quantitative Cross-Linking MS Using Isotope-Labeled Protein Interaction Reporter (PIR) Cross-Linkers.
J Proteome Res
2017
28152603
Large-Scale and Targeted Quantitative Cross-Linking MS Using Isotope-Labeled Protein Interaction Reporter (PIR) Cross-Linkers.
J Proteome Res
2017
28814519
Extracellular Matrix Proteins Mediate HIV-1 gp120 Interactions with α<sub>4</sub>β<sub>7</sub>.
J Virol
2017
27089058
Spectral Library Searching To Identify Cross-Linked Peptides.
J Proteome Res
2016
27153666
XLinkDB 2.0: integrated, large-scale structural analysis of protein crosslinking data.
Bioinformatics
2016
27341434
In Vivo Conformational Dynamics of Hsp90 and Its Interactors.
Cell Chem Biol
2016
27089058
Spectral Library Searching To Identify Cross-Linked Peptides.
J Proteome Res
2016
27997545
A General Method for Targeted Quantitative Cross-Linking Mass Spectrometry.
PLoS One
2016
27834373
In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075.
Nat Commun
2016
27834373
In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075.
Nat Commun
2016
27997545
A General Method for Targeted Quantitative Cross-Linking Mass Spectrometry.
PLoS One
2016
27341434
In Vivo Conformational Dynamics of Hsp90 and Its Interactors.
Cell Chem Biol
2016
27153666
XLinkDB 2.0: integrated, large-scale structural analysis of protein crosslinking data.
Bioinformatics
2016
25800553
Probing the protein interaction network of Pseudomonas aeruginosa cells by chemical cross-linking mass spectrometry.
Structure
2015
25800553
Probing the protein interaction network of Pseudomonas aeruginosa cells by chemical cross-linking mass spectrometry.
Structure
2015
26656710
Visualization of Host-Polerovirus Interaction Topologies Using Protein Interaction Reporter Technology.
J Virol
2015
26181434
Research Resource: Androgen Receptor Activity Is Regulated Through the Mobilization of Cell Surface Receptor Networks.
Mol Endocrinol
2015
1 - 50 of 290
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