Author details

Full Name

James S Eddes

Affiliation

ORCID

Career Start Year

1995

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
26874015	Phosphorylation of NS5A Serine-235 is essential to hepatitis C virus RNA replication and normal replication compartment formation.	Virology	2016
23214983	Tryptic peptide reference data sets for MALDI imaging mass spectrometry on formalin-fixed ovarian cancer tissues.	Journal of Proteome Research	2013
23418145	Matrix-assisted laser desorption/ionization imaging protocol for in situ characterization of tryptic peptide identity and distribution in formalin-fixed tissue.	Rapid Communications in Mass Spectrometry	2013
22634080	Internal calibrants allow high accuracy peptide matching between MALDI imaging MS and LC-MS/MS.	Journal of Proteomics	2012
19195997	Proteomic analyses using Grifola frondosa metalloendoprotease Lys-N.	J Proteome Res	2009
18806791	Building consensus spectral libraries for peptide identification in proteomics.	Nat Methods	2008
19087345	Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.	BMC Bioinformatics	2008
20157627	Differential Plasma Glycoproteome of p19 Skin Cancer Mouse Model Using the Corra Label-Free LC-MS Proteomics Platform.	Clin Proteomics	2008
17711323	The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools.	J Proteome Res	2008
17295354	Development and validation of a spectral library searching method for peptide identification from MS/MS.	Proteomics	2007
17101051	Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas.	Genome Biol	2006
16352522	Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides.	Mol Cell Proteomics	2006
16944939	Protein cross-linking analysis using mass spectrometry, isotope-coded cross-linkers, and integrated computational data processing.	J Proteome Res	2006
16381952	The PeptideAtlas project.	Nucleic Acids Res	2006
16052629	Application of 2-D free-flow electrophoresis/RP-HPLC for proteomic analysis of human plasma depleted of multi high-abundance proteins.	Proteomics	2005
16104056	Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database.	Proteomics	2005
14616009	Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation.	Anal Chem	2003
12362328	CHOMPER: a bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high-throughput proteomic strategies.	Proteomics	2002
11503205	Continuous free-flow electrophoresis separation of cytosolic proteins from the human colon carcinoma cell line LIM 1215: a non two-dimensional gel electrophoresis-based proteome analysis strategy.	Proteomics	2001
10870958	Proteomic analysis of the human colon carcinoma cell line (LIM 1215): development of a membrane protein database.	Electrophoresis	2000
10066782	Disulfide bond structure and N-glycosylation sites of the extracellular domain of the human interleukin-6 receptor.	J Biol Chem	1999
9629920	Two-dimensional electrophoretic analysis of mixed lineage kinase 2 N-terminal domain binding proteins.	Electrophoresis	1998
9629929	Characterization of rat brain stathmin isoforms by two-dimensional gel electrophoresis-matrix assisted laser desorption/ionization and electrospray ionization-ion trap mass spectrometry.	Electrophoresis	1998
9629921	Two-dimensional gel database of human breast carcinoma cell expressed proteins: an update.	Electrophoresis	1998
9150946	Two-dimensional electrophoretic analysis of human breast carcinoma proteins: mapping of proteins that bind to the SH3 domain of mixed lineage kinase MLK2.	Electrophoresis	1997
9246624	Fabrication of stable packed capillary reversed-phase columns for protein structural analysis.	J Protein Chem	1997
9150948	A two-dimensional gel database of human colon carcinoma proteins.	Electrophoresis	1997
8783016	S-pyridylethylation of intact polyacrylamide gels and in situ digestion of electrophoretically separated proteins: a rapid mass spectrometric method for identifying cysteine-containing peptides.	Electrophoresis	1996
7498156	Nonreducing two-dimensional polyacrylamide gel electrophoretic analysis of human colonic proteins.	Electrophoresis	1995