Author details

Full Name

Rasmus Nielsen

Affiliation

ORCID

Career Start Year

1997

Papers

305

H Index

114

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37488236	Functional annotation of variants of the BRCA2 gene via locally haploid human pluripotent stem cells.		2023
36780565	Bayesian inference of admixture graphs on Native American and Arctic populations.		2023
37308700	North African fox genomes show signatures of repeated introgression and adaptation to life in deserts.		2023
35080614	SCONCE: a method for profiling copy number alterations in cancer evolution using single-cell whole genome sequencing.		2022
35839249	Estimating the timing of multiple admixture events using 3-locus linkage disequilibrium.	PLoS Genetics	2022
35647675	distAngsd: Fast and Accurate Inference of Genetic Distances for Next-Generation Sequencing Data.	Molecular Biology and Evolution	2022
35430886	Covariance of pairwise differences on a multi-species coalescent tree and implications for .	Philosophical Transactions of the Royal Society B: Biological Sciences	2022
36146872	Predicting Egg Passage Adaptations to Design Better Vaccines for the H3N2 Influenza Virus.	Viruses	2022
35679302	Population Genomics of Variegated Toad-Headed Lizard Phrynocephalus versicolor and Its Adaptation to the Colorful Sand of the Gobi Desert.	Genome Biology and Evolution	2022
35986254	SCONCE2: jointly inferring single cell copy number profiles and tumor evolutionary distances.	BMC Bioinformatics	2022
35476999	The Tibetan-Yi region is both a corridor and a barrier for human gene flow.	Cell Reports	2022
34626111	Detecting Selection in Multiple Populations by Modeling Ancestral Admixture Components.	Molecular Biology and Evolution	2022
35333304	Evaluation of methods for estimating coalescence times using ancestral recombination graphs.	Genetics	2022
34668516	AncestralClust: clustering of divergent nucleotide sequences by ancestral sequence reconstruction using phylogenetic trees.		2022
34795381	Whole-genome sequence analysis unveils different origins of European and Asiatic mouflon and domestication-related genes in sheep.	Communications Biology	2021
33707634	Author Correction: Population genomics of the Viking world.	Nature	2021
34050022	The history and evolution of the Denisovan- haplotype in Tibetans.	Proceedings of the National Academy of Sciences of the United States of America	2021
34145931	The genomics of mimicry: Gene expression throughout development provides insights into convergent and divergent phenotypes in a MÃ¼llerian mimicry system.	Molecular Ecology	2021
33986172	Investigate the origins of COVID-19.	Science	2021
33502512	Inferring Adaptive Introgression Using Hidden Markov Models.	Molecular Biology and Evolution	2021
33500788	Synonymous mutations and the molecular evolution of SARS-CoV-2Â origins.	Virus Evolution	2021
33440170	Disentangling selection on genetically correlated polygenic traits via whole-genome genealogies.	American Journal of Human Genetics	2021
34186053	The distribution of waiting distances in ancestral recombination graphs.	Theoretical Population Biology	2021
34343337	Human-Mediated Admixture and Selection Shape the Diversity on the Modern Swine (Sus scrofa) Y Chromosomes.	Molecular Biology and Evolution	2021
33863602	Life in Deserts: The Genetic Basis of Mammalian Desert Adaptation.	Trends in Ecology and Evolution	2021
33295605	Assessing Uncertainty in the Rooting of the SARS-CoV-2 Phylogeny.	Molecular Biology and Evolution	2021
31504166	A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data.	Bioinformatics	2020
32027369	Phenotypic Convergence Is Not Mirrored at the Protein Level in a Lizard Adaptive Radiation.	Molecular Biology and Evolution	2020
31651955	A Bayesian Framework for Inferring the Influence of Sequence Context on Point Mutations.	Molecular Biology and Evolution	2020
31787049	Pronounced somatic bottleneck in mitochondrial DNA of human hair.	Philosophical Transactions of the Royal Society B: Biological Sciences	2020
31873311	No statistical evidence for an effect of CCR5-â¿¿32 on lifespan in the UK Biobank cohort.	Nat Med	2020
32384152	Ancient Hybridization with an Unknown Population Facilitated High-Altitude Adaptation of Canids.	Molecular Biology and Evolution	2020
32763953	On the Distribution of Tract Lengths During Adaptive Introgression.	G3: Genes, Genomes, Genetics	2020
32814358	Divergence, gene flow, and the origin of leapfrog geographic distributions: The history of colour pattern variation in Phyllobates poison-dart frogs.	Molecular Ecology	2020
32797037	Inferring the ancestry of parents and grandparents from genetic data.	PLoS Computational Biology	2020
32555579	VolcanoFinder: Genomic scans for adaptive introgression.	PLoS Genetics	2020
31050681	Temporal genomic contrasts reveal rapid evolutionary responses in an alpine mammal during recent climate change.	PLoS Genetics	2019
31595084	Retraction Note: CCR5-â¿¿32 is deleterious in the homozygous state in humans.	Nature Medicine	2019
31757848	Bottleneck and selection in the germline and maternal age influence transmission of mitochondrial DNA in human pedigrees.	Proc Natl Acad Sci U S A	2019
30528431	Emergence and Spread of Basal Lineages of YersiniaÂ pestis during the Neolithic Decline.	Cell	2019
30561532	Passage Adaptation Correlates With the Reduced Efficacy of the Influenza Vaccine.	Clinical Infectious Diseases	2019
30765607	Parallel adaptation of rabbit populations to myxoma virus.	Science	2019
31123041	Joint Estimation of Pedigrees and Effective Population Size Using Markov Chain Monte Carlo.	Genetics	2019
31160814	CCR5-â¿¿32 is deleterious in the homozygous state in humans.	Nature Medicine	2019
29677510	Physiological and Genetic Adaptations to Diving in Sea Nomads.	Cell	2018
30166629	Author Correction: 137 ancient human genomes from across the Eurasian steppes.	Nature	2018
29876645	On the number of siblings and p-th cousins in a large population sample.	Journal of Mathematical Biology	2018
30206187	Estimating the Timing of Multiple Admixture Pulses During Local Ancestry Inference.	Genetics	2018
30197088	The Genetic Basis of Adaptation following Plastic Changes in Coloration in a Novel Environment.	Current Biology	2018
30290141	Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History.	Cell	2018