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Author Details

Eric W Deutsch
Institute for Systems Biology
2000
177
62
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37653270Proteomic changes induced by longevity-promoting interventions in mice.Geroscience2024
37653270Proteomic changes induced by longevity-promoting interventions in mice.Geroscience2024
36318223The 2022 Report on the Human Proteome from the HUPO Human Proteome Project.J Proteome Res2023
36370099The ProteomeXchange consortium at 10 years: 2023 update.Nucleic Acids Res2023
36074795Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future.Proteomics2023
36318223The 2022 Report on the Human Proteome from the HUPO Human Proteome Project.J Proteome Res2023
37572790What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?Mol Cell Proteomics2023
37092802Does the Ubiquitination Degradation Pathway Really Reach inside of the Chloroplast? A Re-Evaluation of Mass Spectrometry-Based Assignments of Ubiquitination.J Proteome Res2023
36648445Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite.J Proteome Res2023
37333403Mapping the <i>Arabidopsis thaliana</i> proteome in PeptideAtlas and the nature of the unobserved (dark) proteome; strategies towards a complete proteome.bioRxiv2023
36752514ARAX: a graph-based modular reasoning tool for translational biomedicine.Bioinformatics2023
36806354Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames.Mol Cell2023
36693629ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics.J Proteome Res2023
36626722Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.J Proteome Res2023
36744821Toward an Integrated Machine Learning Model of a Proteomics Experiment.J Proteome Res2023
37292611What can Ribo-seq and proteomics tell us about the non-canonical proteome?bioRxiv2023
37572790What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?Mol Cell Proteomics2023
37292611What can Ribo-seq and proteomics tell us about the non-canonical proteome?bioRxiv2023
37333403Mapping the <i>Arabidopsis thaliana</i> proteome in PeptideAtlas and the nature of the unobserved (dark) proteome; strategies towards a complete proteome.bioRxiv2023
37092802Does the Ubiquitination Degradation Pathway Really Reach inside of the Chloroplast? A Re-Evaluation of Mass Spectrometry-Based Assignments of Ubiquitination.J Proteome Res2023
36626722Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.J Proteome Res2023
36752514ARAX: a graph-based modular reasoning tool for translational biomedicine.Bioinformatics2023
36693629ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics.J Proteome Res2023
36648445Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite.J Proteome Res2023
36744821Toward an Integrated Machine Learning Model of a Proteomics Experiment.J Proteome Res2023
36806354Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames.Mol Cell2023
36074795Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future.Proteomics2023
36370099The ProteomeXchange consortium at 10 years: 2023 update.Nucleic Acids Res2023
35290070Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.J Proteome Res2022
36175836RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine.BMC Bioinformatics2022
35831657Standardized annotation of translated open reading frames.Nat Biotechnol2022
35640880Method for Independent Estimation of the False Localization Rate for Phosphoproteomics.J Proteome Res2022
35549218A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics.J Proteome Res2022
35290070Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.J Proteome Res2022
35549218A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics.J Proteome Res2022
35831657Standardized annotation of translated open reading frames.Nat Biotechnol2022
35640880Method for Independent Estimation of the False Localization Rate for Phosphoproteomics.J Proteome Res2022
36175836RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine.BMC Bioinformatics2022
32864978mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements.J Proteome Res2021
33970638Universal Spectrum Explorer: A Standalone (Web-)Application for Cross-Resource Spectrum Comparison.J Proteome Res2021
34183830Universal Spectrum Identifier for mass spectra.Nat Methods2021
33711481Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future.Mol Cell Proteomics2021
32864978mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements.J Proteome Res2021
34672606Advances and Utility of the Human Plasma Proteome.J Proteome Res2021
34670092Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project.J Proteome Res2021
34615866A proteomics sample metadata representation for multiomics integration and big data analysis.Nat Commun2021
34411258The Arabidopsis PeptideAtlas: Harnessing worldwide proteomics data to create a comprehensive community proteomics resource.Plant Cell2021
33711481Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future.Mol Cell Proteomics2021
34411258The Arabidopsis PeptideAtlas: Harnessing worldwide proteomics data to create a comprehensive community proteomics resource.Plant Cell2021
34672606Advances and Utility of the Human Plasma Proteome.J Proteome Res2021
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Collaborators

Institute for Systems Biology
Co-authored papers 56
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 53
and School of Public Health, University of Michigan ann arbor
Co-authored papers 40
EMBL-European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 32
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 30
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Co-authored papers 24
Institute of Systems, University of Liverpool
Co-authored papers 22
College of Life Sciences and Biotechnology, Yonsei University
Co-authored papers 18
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 17
SIB Swiss Institute of Bioinformatics and University of Geneva
Co-authored papers 17
University of California
Co-authored papers 17
University of British Columbia
Co-authored papers 16
University of Washington
Co-authored papers 15
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 15
Macquarie University
Co-authored papers 14
Northeastern University
Co-authored papers 13
Institute for Systems Biology
Co-authored papers 13
Co-authored papers 11
McGill University
Co-authored papers 10
Smidt Heart Institute, Cedars-Sinai Medical Center
Co-authored papers 10
National Center for Biotechnology
Co-authored papers 10
University of Michigan ann arbor
Co-authored papers 10
Co-authored papers 10
Co-authored papers 10
National Center for Biotechnology
Co-authored papers 10
Co-authored papers 9
Institute for Systems Biology
Co-authored papers 8
Stanford University
Co-authored papers 8
Co-authored papers 7