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Author Details

Paul Wilmes
University of Luxembourg
2004
135
45
PMIDPaper TitleJournal TitlePublished Year
37957315Forecasting the dynamics of a complex microbial community using integrated meta-omics.Nat Ecol Evol2024
36894986Altered infective competence of the human gut microbiome in COVID-19.Microbiome2023
37597865Protocol for a multicentre cross-sectional, longitudinal ambulatory clinical trial in rheumatoid arthritis and Parkinson's disease patients analysing the relation between the gut microbiome, fasting and immune status in Germany (ExpoBiome).BMJ Open2023
38075858A toolbox of machine learning software to support microbiome analysis.Front Microbiol2023
37709964Author Correction: The gut microbial metabolite formate exacerbates colorectal cancer progression.Nat Metab2023
37578222A Gut-on-a-Chip Model to Study the Gut Microbiome-Nervous System Axis.J Vis Exp2023
37676767Fiber deprivation and microbiome-borne curli shift gut bacterial populations and accelerate disease in a mouse model of Parkinson's disease.Cell Rep2023
37468677Spatio-functional organization in virocells of small uncultivated archaea from the deep biosphere.ISME J2023
37468056Lower gastric sensitivity in quiescent inflammatory bowel disease than in irritable bowel syndrome.Physiol Behav2023
36913905Reservoirs of antimicrobial resistance in the context of One Health.Curr Opin Microbiol2023
36688698Glacier-Fed Stream Biofilms Harbor Diverse Resistomes and Biosynthetic Gene Clusters.Microbiol Spectr2023
34522009Microdiversity characterizes prevalent phylogenetic clades in the glacier-fed stream microbiome.ISME J2022
35480624Combinatorial analysis reveals highly coordinated early-stage immune reactions that predict later antiviral immunity in mild COVID-19 patients.Cell Rep Med2022
35444202Genomic and metabolic adaptations of biofilms to ecological windows of opportunity in glacier-fed streams.Nat Commun2022
35474872Toward hypothesis-driven, personalized microbiome screening.Cell Rep Methods2022
35437333The gut microbial metabolite formate exacerbates colorectal cancer progression.Nat Metab2022
35829770Studying the Parkinson's disease metabolome and exposome in biological samples through different analytical and cheminformatics approaches: a pilot study.Anal Bioanal Chem2022
35484157Evolution of the murine gut resistome following broad-spectrum antibiotic treatment.Nat Commun2022
35655063The microbiome of cryospheric ecosystems.Nat Commun2022
36578059Alterations of oral microbiota and impact on the gut microbiome in type 1 diabetes mellitus revealed by integrated multi-omic analyses.Microbiome2022
36498091Long COVID Classification: Findings from a Clustering Analysis in the Predi-COVID Cohort Study.Int J Environ Res Public Health2022
36111782Mobilome-driven segregation of the resistome in biological wastewater treatment.Elife2022
36148927Disease Progression, Resilience, and Inflammation Markers During the Coronavirus Disease 2019 Pandemic in Parkinson's Disease.Mov Disord2022
36108614SnapShot: The Expobiome Map.Cell Host Microbe2022
36108612The gut microbiome molecular complex in human health and disease.Cell Host Microbe2022
36239393binny: an automated binning algorithm to recover high-quality genomes from complex metagenomic datasets.Brief Bioinform2022
35983269Long COVID Symptomatology After 12 Months and Its Impact on Quality of Life According to Initial Coronavirus Disease 2019 Disease Severity.Open Forum Infect Dis2022
35320603Glacier shrinkage will accelerate downstream decomposition of organic matter and alters microbiome structure and function.Glob Chang Biol2022
35005678The benefits, costs and feasibility of a low incidence COVID-19 strategy.Lancet Reg Health Eur2022
33139880Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics.Nat Microbiol2021
36717704Persistence of birth mode-dependent effects on gut microbiome composition, immune system stimulation and antimicrobial resistance during the first year of life.ISME Commun2021
33597026PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data.Microbiome2021
33584660IgE-Mediated Peanut Allergy: Current and Novel Predictive Biomarkers for Clinical Phenotypes Using Multi-Omics Approaches.Front Immunol2021
34911965Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.Nat Commun2021
34930457The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes.Microbiome2021
35106519Systematic characterization of human gut microbiome-secreted molecules by integrated multi-omics.ISME Commun2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34453168Functional meta-omics provide critical insights into long- and short-read assemblies.Brief Bioinform2021
34076241Mantis: flexible and consensus-driven genome annotation.Gigascience2021
33937902Generalisation of COVID-19 incidences provides a biased view of the actual epidemiological situation.Lancet Reg Health Eur2021
33984880Unification of functional annotation descriptions using text mining.Biol Chem2021
34239997Emulating the gut-liver axis: Dissecting the microbiome's effect on drug metabolism using multiorgan-on-chip models.Curr Opin Endocr Metab Res2021
34194470Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies.Front Genet2021
33947340SARS-CoV-2 transmission in educational settings during an early summer epidemic wave in Luxembourg, 2020.BMC Infect Dis2021
33997830SARS-CoV-2 transmission risk from asymptomatic carriers: Results from a mass screening programme in Luxembourg.Lancet Reg Health Eur2021
32483294Integrative omics analysis of the termite gut system adaptation to Miscanthus diet identifies lignocellulose degradation enzymes.Commun Biol2020
31812830The microbiome-gut-brain axis in acute and chronic brain diseases.Curr Opin Neurobiol2020
31964679Correction for Bellenberg et al., "Automated Microscopic Analysis of Metal Sulfide Colonization by Acidophilic Microorganisms".Appl Environ Microbiol2020
31964336Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and steady-state signalling simulations.BMC Bioinformatics2020
33408714<i>Fusobacterium nucleatum</i> Extracellular Vesicles Modulate Gut Epithelial Cell Innate Immunity <i>via</i> FomA and TLR2.Front Immunol2020
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Collaborators

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Co-authored papers 4
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Co-authored papers 4
University of Wurzburg
Co-authored papers 3
Weizmann Institute of Science
Co-authored papers 2
Hanyang University
Co-authored papers 2
Max Planck Institute for Developmental Biology
Co-authored papers 2
Indiana University
Co-authored papers 2
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Co-authored papers 2
CNRS, Aix-Marseille University
Co-authored papers 2
Southeast University
Co-authored papers 2
University of California
Co-authored papers 2
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Co-authored papers 2
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Lawrence Berkeley National Laboratory
Co-authored papers 2
College Station
Co-authored papers 2
University of Minnesota
Co-authored papers 2
University of Tennessee Knoxville
Co-authored papers 2
Harvard T.H. Chan School of Public Health
Co-authored papers 1
Weizmann Institute of Science
Co-authored papers 1
Dalhousie University
Co-authored papers 1
Institut de Genetique et de Biologie Moleculaire et Cellulaire
Co-authored papers 1
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Harvard University
Co-authored papers 1
Clalit Health Services, Ben Gurion University
Co-authored papers 1
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ETH Zurich, University Hospital Zurich
Co-authored papers 1
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Virginia Commonwealth University
Co-authored papers 1