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Author Details

Sara J Cooper
2005
50
21
PMIDPaper TitleJournal TitlePublished Year
37291514Transcriptomic and functional analysis of ANGPTL4 overexpression in pancreatic cancer nominates targets that reverse chemoresistance.2023
37996815Genomic analysis reveals HDAC1 regulates clinically relevant transcriptional programs in Pancreatic cancer.2023
38086808Carmofur prevents cell cycle progression by reducing E2F8 transcription in temozolomide-resistant glioblastoma cells.Cell Death Discov2023
37090552<i>MAPT</i> expression is mediated by long-range interactions with <i>cis</i>-regulatory elements.bioRxiv2023
36747689Transcriptomic and functional analysis of ANGPTL4 overexpression in pancreatic cancer nominates targets that reverse chemoresistance.2023
37308299Contributions of rare and common variation to early-onset and atypical dementia risk.Cold Spring Harb Mol Case Stud2023
36798301Contributions of rare and common variation to early-onset and atypical dementia risk.medRxiv2023
37506491Genome-wide DNA methylation analysis implicates enrichment of interferon pathway in African American patients with Systemic Lupus Erythematosus and European Americans with lupus nephritis.J Autoimmun2023
35263766Circulating Tregs Accumulate in Omental Tumors and Acquire Adipose-Resident Features.Cancer Immunol Res2022
35456486Transcriptomic Analysis of Canine Osteosarcoma from a Precision Medicine Perspective Reveals Limitations of Differential Gene Expression Studies.Genes2022
35741006Targeting Acid Ceramidase Inhibits Glioblastoma Cell Migration through Decreased AKT Signaling.Cells2022
35994499Reduced sister chromatid cohesion acts as a tumor penetrance modifier.PLoS Genet2022
35031546Metabolic Alterations and WNT Signaling Impact Immune Response in HGSOC.Clin Cancer Res2022
33945569Novel dopamine receptor 3 antagonists inhibit the growth of primary and temozolomide resistant glioblastoma cells.PLoS One2021
34234242Three dimensional modeling of biologically relevant fluid shear stress in human renal tubule cells mimics in vivo transcriptional profiles.Sci Rep2021
33843470A role for GLUT3 in glioblastoma cell invasion that is not recapitulated by GLUT1.Cell Adh Migr2021
34049503Pooled CRISPR screening in pancreatic cancer cells implicates co-repressor complexes as a cause of multiple drug resistance via regulation of epithelial-to-mesenchymal transition.BMC Cancer2021
32616518Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations.Genome Res2020
32313567Inhibition of the Wnt/β-catenin pathway enhances antitumor immunity in ovarian cancer.Ther Adv Med Oncol2020
32213921Inhibiting WNT Ligand Production for Improved Immune Recognition in the Ovarian Tumor Microenvironment.Cancers2020
30629778Chromodomain Helicase DNA-Binding Protein 7 Is Suppressed in the Perinecrotic/Ischemic Microenvironment and Is a Novel Regulator of Glioblastoma Angiogenesis.Stem Cells2019
31720815Histone deacetylase inhibition promotes intratumoral CD8 T-cell responses, sensitizing murine breast tumors to anti-PD1.Cancer Immunology, Immunotherapy2019
30334128The expression of MHC class II molecules on murine breast tumors delays T-cell exhaustion, expands the T-cell repertoire, and slows tumor growth.Cancer Immunology, Immunotherapy2019
29409010Reactive species balance via GTP cyclohydrolase I regulates glioblastoma growth and tumor initiating cell maintenance.Neuro Oncol2018
30485278powerTCR: A model-based approach to comparative analysis of the clone size distribution of the T cell receptor repertoire.PLoS Comput Biol2018
29523763Molecular Response to Neoadjuvant Chemotherapy in High-Grade Serous Ovarian Carcinoma.Mol Cancer Res2018
29280991R2DGC: threshold-free peak alignment and identification for 2D gas chromatography-mass spectrometry in R.2018
27865919Differential stress induced c-Fos expression and identification of region-specific miRNA-mRNA networks in the dorsal raphe and amygdala of high-responder/low-responder rats.Behavioural Brain Research2017
28454104RNA sequencing-based cell proliferation analysis across 19 cancers identifies a subset of proliferation-informative cancers with a common survival signature.Oncotarget2017
28754123Post-mortem molecular profiling of three psychiatric disorders.Genome Med2017
28412973Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns.BMC Cancer2017
29021291A genome-wide interactome of DNA-associated proteins in the human liver.Genome Res2017
29263302Addition of carbonic anhydrase 9 inhibitor SLC-0111 to temozolomide treatment delays glioblastoma growth in vivo.JCI Insight2017
28049721Pex35 is a regulator of peroxisome abundance.J Cell Sci2017
28108448aRNApipe: a balanced, efficient and distributed pipeline for processing RNA-seq data in high-performance computing environments.Bioinformatics2017
28030809Genomic regulation of invasion by STAT3 in triple negative breast cancer.Oncotarget2017
28239968Training in metabolomics research. II. Processing and statistical analysis of metabolomics data, metabolite identification, pathway analysis, applications of metabolomics and its future.J Mass Spectrom2016
27434812Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data.J Mass Spectrom2016
27434804Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data.J Mass Spectrom2016
27282075RNA sequencing of pancreatic adenocarcinoma tumors yields novel expression patterns associated with long-term survival and reveals a role for ANGPTL4.Mol Oncol2016
27401066Distinct gene regulatory programs define the inhibitory effects of liver X receptors and PPARG on cancer cell proliferation.Genome Med2016
26658453Targeting the Wnt/β-catenin pathway in primary ovarian cancer with the porcupine inhibitor WNT974.Lab Invest2016
27574806Kinase Gene Expression Profiling of Metastatic Clear Cell Renal Cell Carcinoma Tissue Identifies Potential New Therapeutic Targets.PLoS One2016
23720455Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast.Genome Res2013
21085730Suppression of statin effectiveness by copper and zinc in yeast and human cells.Mol Biosyst2011
20610602High-throughput profiling of amino acids in strains of the Saccharomyces cerevisiae deletion collection.Genome Res2010
17571346Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.Nature2007
17200232Serum response factor binding sites differ in three human cell types.Genome Res2007
16344566Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome.Genome Res2006
15899964Direct isolation and identification of promoters in the human genome.Genome Res2005
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