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Author Details

Matthew R Olm
University of California berkeley
2014
34
22
PMIDPaper TitleJournal TitlePublished Year
36864482Using strain-resolved analysis to identify contamination in metagenomics data.Microbiome2023
38045399Metagenomic Immunoglobulin Sequencing (MIG-Seq) Exposes Patterns of IgA Antibody Binding in the Healthy Human Gut Microbiome.bioRxiv2023
37348505Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes.Cell2023
36945614Hadza <i>Prevotella</i> Require Diet-derived Microbiota Accessible Carbohydrates to Persist in Mice.bioRxiv2023
34972823Microbiome assembly in The Gambia.Nat Microbiol2022
35679413Robust variation in infant gut microbiome assembly across a spectrum of lifestyles.Science2022
36238714Ultra-deep Sequencing of Hadza Hunter-Gatherers Recovers Vanishing Gut Microbes.bioRxiv2022
33468686Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants.mBio2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34622230Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition.Cell Rep Med2021
34154658Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics.Microbiome2021
34007025Ancient human faeces reveal gut microbes of the past.Nature2021
34022966Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale.Microbiome2021
33462508inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains.Nat Biotechnol2021
33361114Transporter genes in biosynthetic gene clusters predict metabolite characteristics and siderophore activity.Genome Res2021
32130257Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut.PLoS One2020
31937678Consistent Metagenome-Derived Metrics Verify and Delineate Bacterial Species Boundaries.mSystems2020
32327732Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow.ISME J2020
30692531Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria.Nat Commun2019
31844663Necrotizing enterocolitis is preceded by increased gut bacterial replication, <i>Klebsiella</i>, and fimbriae-encoding bacteria.Sci Adv2019
30809011Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network.ISME J2019
30770768Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms.Microbiome2019
30914645Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria.Nat Commun2019
30692672Megaphages infect Prevotella and variants are widespread in gut microbiomes.Nat Microbiol2019
29359195Machine Learning Leveraging Genomes from Metagenomes Identifies Influential Antibiotic Resistance Genes in the Infant Gut Microbiome.mSystems2018
29925423The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms.Microbiome2018
29636439Hospitalized Premature Infants Are Colonized by Related Bacterial Strains with Distinct Proteomic Profiles.mBio2018
28073918Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates.Genome Res2017
28223457The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis.mBio2017
29180750Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome.Nat Commun2017
28742071dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication.ISME J2017
27146086Function, expression, specificity, diversity and incompatibility of actinobacteriophage parABS systems.Mol Microbiol2016
27819664Measurement of bacterial replication rates in microbial communities.Nat Biotechnol2016
24335314Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes.J Virol2014
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Collaborators

University of California berkeley
Co-authored papers 8
Stanford University
Co-authored papers 7
Stanford University
Co-authored papers 3
University of California san francisco
Co-authored papers 2
Stanford University
Co-authored papers 2
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University of Pittsburgh
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Institute of Clinical Molecular Biology, Kiel University
Co-authored papers 1
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Dalhousie University
Co-authored papers 1
Institut de Genetique et de Biologie Moleculaire et Cellulaire
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Weizmann Institute of Science
Co-authored papers 1
Virginia Commonwealth University
Co-authored papers 1
National Center for Toxicological Research
Co-authored papers 1
University of California san francisco
Co-authored papers 1
University of Minnesota, Mailman School of Public Health Columbia University
Co-authored papers 1
Department of Bioinformatics and Clinical Systems
Co-authored papers 1
Monash University
Co-authored papers 1
David Geffen School of Medicine, University of California Los Angeles
Co-authored papers 1
Paris Center for Microbiome Medicine
Co-authored papers 1
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 1
Center for Computational Biomedicine, Harvard Medical School
Co-authored papers 1
University of North Carolina at Charlotte
Co-authored papers 1
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 1
Oregon State University
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Nanning First People's Hospital
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Tokyo Institute of Technology
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SAS Institute Inc Cary
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Graduate School of Public Health and Health Policy, City University of New York
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