Skip to Main Content

Author Details

Andrew J Gentles
Stanford Center for Biomedical Informatics Research, Stanford University
1999
102
43
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35926108Single-cell genomics in AML: extending the frontiers of AML research.Blood2023
37790561AML/T cell interactomics uncover correlates of patient outcomes and the key role of ICAM1 in T cell killing of AML.bioRxiv2023
37978395Loss of p53-DREAM-mediated repression of cell cycle genes as a driver of lymph node metastasis in head and neck cancer.Genome Med2023
37067534Translatome analysis reveals microglia and astrocytes to be distinct regulators of inflammation in the hyperacute and acute phases after stroke.Glia2023
36879008High-resolution alignment of single-cell and spatial transcriptomes with CytoSPACE.Nat Biotechnol2023
36541010Single Cell Spatial Biology for Precision Cancer Medicine.Pac Symp Biocomput2023
36824949Translatome analysis reveals microglia and astrocytes to be distinct regulators of inflammation in the hyperacute and acute phases after stroke.bioRxiv2023
36929073Profiling Cellular Ecosystems at Single-Cell Resolution and at Scale with EcoTyper.Methods Mol Biol2023
35094088NSD1 mutations deregulate transcription and DNA methylation of bivalent developmental genes in Sotos syndrome.Hum Mol Genet2022
35525247Lymph node colonization induces tumor-immune tolerance to promote distant metastasis.Cell2022
35654951Identification of cell types in multiplexed in situ images by combining protein expression and spatial information using CELESTA.Nat Methods2022
35864305Peripheral blood DNA methylation profiles predict future development of B-cell Non-Hodgkin Lymphoma.NPJ Precis Oncol2022
33024996Conditional expression of HGAL leads to the development of diffuse large B-cell lymphoma in mice.Blood2021
33795428Transient rest restores functionality in exhausted CAR-T cells through epigenetic remodeling.Science2021
33670534Prognostic Gene Expression, Stemness and Immune Microenvironment in Pediatric Tumors.Cancers (Basel)2021
34903734Clonal architecture predicts clinical outcomes and drug sensitivity in acute myeloid leukemia.Nat Commun2021
34469729High-grade serous ovarian tumor cells modulate NK cell function to create an immune-tolerant microenvironment.Cell Rep2021
34543391HGAL inhibits lymphoma dissemination by interacting with multiple cytoskeletal proteins.Blood Adv2021
34597589The landscape of tumor cell states and ecosystems in diffuse large B cell lymphoma.Cancer Cell2021
34597583Atlas of clinically distinct cell states and ecosystems across human solid tumors.Cell2021
34244432Landscape of innate lymphoid cells in human head and neck cancer reveals divergent NK cell states in the tumor microenvironment.Proc Natl Acad Sci U S A2021
32402275Maternal Anti-Dengue IgG Fucosylation Predicts Susceptibility to Dengue Disease in Infants.Cell Rep2020
31933479<i>MYC</i> and <i>Twist1</i> cooperate to drive metastasis by eliciting crosstalk between cancer and innate immunity.Elife2020
32238925CRISPR screens in cancer spheroids identify 3D growth-specific vulnerabilities.Nature2020
32381040A human lung tumor microenvironment interactome identifies clinically relevant cell-type cross-talk.Genome Biol2020
30398435Quantification of Macrophages in High-Grade Gliomas by Using Ferumoxytol-enhanced MRI: A Pilot Study.Radiology2019
31741777Prognostic profiling of the immune cell microenvironment in Ewing´s Sarcoma Family of Tumors.Oncoimmunology2019
31217338Targetable genetic alterations of <i>TCF4</i> (<i>E2-2</i>) drive immunoglobulin expression in diffuse large B cell lymphoma.Sci Transl Med2019
31433971The Immune Landscape of Cancer.Immunity2019
31515215Perfusion MRI-Based Fractional Tumor Burden Differentiates between Tumor and Treatment Effect in Recurrent Glioblastomas and Informs Clinical Decision-Making.AJNR Am J Neuroradiol2019
31447348LMO2 Confers Synthetic Lethality to PARP Inhibition in DLBCL.Cancer Cell2019
31061481Determining cell type abundance and expression from bulk tissues with digital cytometry.Nat Biotechnol2019
30728456Data mining for mutation-specific targets in acute myeloid leukemia.Leukemia2019
28727543Non-Small Cell Lung Cancer Radiogenomics Map Identifies Relationships between Molecular and Imaging Phenotypes with Prognostic Implications.Radiology2018
29545928Brd4 regulates the expression of essential autophagy genes and Keap1 in AML cells.Oncotarget2018
29513759Subtype assignment of CLL based on B-cell subset associated gene signatures from normal bone marrow - A proof of concept study.PLoS One2018
29625051Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation.Cell2018
29760045<i>GFPT2</i>-Expressing Cancer-Associated Fibroblasts Mediate Metabolic Reprogramming in Human Lung Adenocarcinoma.Cancer Res2018
29331675Module Analysis Captures Pancancer Genetically and Epigenetically Deregulated Cancer Driver Genes for Smoking and Antiviral Response.EBioMedicine2018
27663899Role of KEAP1/NRF2 and TP53 Mutations in Lung Squamous Cell Carcinoma Development and Radiation Resistance.Cancer Discov2017
28314692Identification of an atypical etiological head and neck squamous carcinoma subtype featuring the CpG island methylator phenotype.EBioMedicine2017
28089908Human AML-iPSCs Reacquire Leukemic Properties after Differentiation and Model Clonal Variation of Disease.Cell Stem Cell2017
29100315Low BUB1 expression is an adverse prognostic marker in gastric adenocarcinoma.Oncotarget2017
29213088NSD1 inactivation defines an immune cold, DNA hypomethylated subtype in squamous cell carcinoma.Sci Rep2017
28679399Data normalization considerations for digital tumor dissection.Genome Biol2017
27145341Identifying Network Perturbation in Cancer.PLoS Comput Biol2016
27151888Pathophysiological significance and therapeutic targeting of germinal center kinase in diffuse large B-cell lymphoma.Blood2016
25398938Mutant WT1 is associated with DNA hypermethylation of PRC2 targets in AML and responds to EZH2 inhibition.Blood2015
26387756CD93 Marks a Non-Quiescent Human Leukemia Stem Cell Population and Is Required for Development of MLL-Rearranged Acute Myeloid Leukemia.Cell Stem Cell2015
26286589Integrating Tumor and Stromal Gene Expression Signatures With Clinical Indices for Survival Stratification of Early-Stage Non-Small Cell Lung Cancer.J Natl Cancer Inst2015
  • 1 - 50 of 102

Recommended Authors

Ganiraju C Manyam
the University of Texas MD Anderson Cancer Center
Career Start Year 2009
Number of shared co-authors 9
Ritu Roy
University of California San Francisco.
Career Start Year 2007
Number of shared co-authors 1
Siyuan Zheng
Greehey Children's Cancer Research Institute
Career Start Year 2007
Number of shared co-authors 26
Matti Nykter
Prostate Cancer Research Center, Tampere University and Tays Cancer Center
Career Start Year 2006
Number of shared co-authors 6
Xiaotu Ma
St. Jude Children's Research Hospital
Career Start Year 2006
Number of shared co-authors 1
Chao Cheng
Baylor College of Medicine
Career Start Year 2005
Number of shared co-authors 2
Matthias Schlesner
University of Augsburg
Career Start Year 2004
Number of shared co-authors 2
Gabriela Alexe
Dana-Farber Cancer Institute
Career Start Year 2004
Number of shared co-authors 5
Catrina Fronick
McDonnell Genome Institute, Washington University in St. Louis School of Medicine
Career Start Year 2004
Number of shared co-authors 5
Peter Van Loo
The Francis Crick Institute
Career Start Year 2003
Number of shared co-authors 1
Amy G Robertson
Present address: Dxige Research Inc.
Career Start Year 2003
Number of shared co-authors 42
Andrew V Kossenkov
The Wistar Institute
Career Start Year 2003
Number of shared co-authors 0
Jianmin Wang
Roswell Park Comprehensive Cancer Center
Career Start Year 2003
Number of shared co-authors 2
Jianhua Zhang
University of Texas MD Anderson Cancer Center
Career Start Year 2003
Number of shared co-authors 25
Obi L Griffith
Washington University
Career Start Year 2003
Number of shared co-authors 8
Syed Haider
Institute of Cancer Research
Career Start Year 2002
Number of shared co-authors 6
Olivier Elemento
Meyer Cancer Center
Career Start Year 2002
Number of shared co-authors 9
Ludmila Danilova
Bloomberg-Kimmel Immunotherapy Institute, Johns Hopkins University School of Medicine
Career Start Year 2001
Number of shared co-authors 13
Jacqueline E Payton
Washington University School of Medicine.
Career Start Year 2001
Number of shared co-authors 7
Sven Bilke
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Career Start Year 2001
Number of shared co-authors 0
Gad Getz
Broad Institute of the Massachusetts Institute of Technology and Harvard
Career Start Year 2000
Number of shared co-authors 42
Celine Lefebvre
The Scripps Research Institute
Career Start Year 1999
Number of shared co-authors 3
Paul T Spellman
Oregon Health & Science University Hospital.
Career Start Year 1998
Number of shared co-authors 17
Benedikt Brors
German Cancer Research Center (DKFZ)
Career Start Year 1997
Number of shared co-authors 2
Robert L Walker
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Career Start Year 1997
Number of shared co-authors 1
Samuel Aparicio
University of British Columbia
Career Start Year 1993
Number of shared co-authors 12
Adam B Olshen
12224University of California san francisco
Career Start Year 1993
Number of shared co-authors 5
Luigi Marchionni
Weill-Cornell School of Medicine
Career Start Year 1989
Number of shared co-authors 3
Todd R Golub
Broad Institute of MIT and Harvard
Career Start Year 1989
Number of shared co-authors 16
Pablo Tamayo
University of California San Diego
Career Start Year 1988
Number of shared co-authors 12

Collaborators

Aaron M Newman
Stanford University
Co-authored papers 12
Ravindra Majeti
Stanford University School of Medicine
Co-authored papers 12
Cuong Hoang-Vu
Center for Cancer Research, National Cancer Institute
Co-authored papers 4
Garry P Nolan
Stanford University School of Medicine
Co-authored papers 3
Peng Qiu
Co-authored papers 3
Mark A Batzer
Louisiana State University
Co-authored papers 3
Su-In Lee
University of Washington
Co-authored papers 3
Adam Pavlicek
Monoceros Biosystems LLC
Co-authored papers 2
John N Weinstein
The University of Texas MD Anderson Cancer Center
Co-authored papers 2
David A Ray
Co-authored papers 2
Antonio Colaprico
Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine
Co-authored papers 2
Ansuman T Satpathy
Stanford University
Co-authored papers 2
Aadel A Chaudhuri
Co-authored papers 2
M Ryan Corces
Gladstone Institute of Neurological Disease
Co-authored papers 2
Alexander Krasnitz
Simons Center for Quantitative Biology
Co-authored papers 2
Alice Yu
Stanford University
Co-authored papers 2
Benjamin A Logsdon
Fred Hutchinson Cancer Research Center
Co-authored papers 2
Houtan Noushmehr
Henry Ford Hospital
Co-authored papers 2
Karen Sachs
Co-authored papers 2
Francisco Vega
The University of Texas MD Anderson Cancer Center
Co-authored papers 2
Tathiane M Malta
School of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo
Co-authored papers 2
Christina S Kong
Stanford University School of Medicine
Co-authored papers 2
Aviv Bergman
Albert Einstein College of Medicine
Co-authored papers 2
Siddhartha Jaiswal
Co-authored papers 2
Alexander J Lazar
The University of Texas MD Anderson Cancer Center
Co-authored papers 2
Nitya S Ramadoss
Co-authored papers 1
E Alejandro Sweet-Cordero
University of California San Francisco
Co-authored papers 1
Manuel Garber
Co-authored papers 1
Chris P Ponting
The University of Edinburgh
Co-authored papers 1
Arvind Rao
University of Michigan-Ann Arbor
Co-authored papers 1
Release 1.2