Author details

Full Name

Huaming Chen

Affiliation

The Salk Institute for Biological Studies

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36690790	Author Correction: PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants.	Nat Genet	2023
38092913	Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain.	Nature	2023
37131654	Single-cell DNA Methylome and 3D Multi-omic Atlas of the Adult Mouse Brain.	bioRxiv	2023
36690790	Author Correction: PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants.	Nat Genet	2023
37425926	Human Immune Cell Epigenomic Signatures in Response to Infectious Diseases and Chemical Exposures.	bioRxiv	2023
38092913	Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain.	Nature	2023
37425926	Human Immune Cell Epigenomic Signatures in Response to Infectious Diseases and Chemical Exposures.	bioRxiv	2023
37131654	Single-cell DNA Methylome and 3D Multi-omic Atlas of the Adult Mouse Brain.	bioRxiv	2023
34140685	PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants.	Nat Genet	2021
34140685	PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants.	Nat Genet	2021
32170290	Integrated multi-omics framework of the plant response to jasmonic acid.	Nat Plants	2020
32170290	Integrated multi-omics framework of the plant response to jasmonic acid.	Nat Plants	2020
32728242	Spatiotemporal DNA methylome dynamics of the developing mouse fetus.	Nature	2020
32728242	Spatiotemporal DNA methylome dynamics of the developing mouse fetus.	Nature	2020
30657772	The complex architecture and epigenomic impact of plant T-DNA insertions.	PLoS Genet	2019
30657772	The complex architecture and epigenomic impact of plant T-DNA insertions.	PLoS Genet	2019
31418686	Epigenetic silencing of a multifunctional plant stress regulator.	Elife	2019
31418686	Epigenetic silencing of a multifunctional plant stress regulator.	Elife	2019
27419873	Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions.	Cell	2016
27419873	Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions.	Cell	2016
27357687	Mapping transcription factor interactome networks using HaloTag protein arrays.	Proc Natl Acad Sci U S A	2016
26605523	Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation.	Nature	2016
27811239	A transcription factor hierarchy defines an environmental stress response network.	Science	2016
26605523	Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation.	Nature	2016
27811239	A transcription factor hierarchy defines an environmental stress response network.	Science	2016
27357687	Mapping transcription factor interactome networks using HaloTag protein arrays.	Proc Natl Acad Sci U S A	2016
26030523	Human body epigenome maps reveal noncanonical DNA methylation variation.	Nature	2015
26030523	Human body epigenome maps reveal noncanonical DNA methylation variation.	Nature	2015
23467092	Patterns of population epigenomic diversity.	Nature	2013
23795294	Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis.	Elife	2013
23467092	Patterns of population epigenomic diversity.	Nature	2013
23664764	Epigenomic analysis of multilineage differentiation of human embryonic stem cells.	Cell	2013
23664764	Epigenomic analysis of multilineage differentiation of human embryonic stem cells.	Cell	2013
23795294	Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis.	Elife	2013
21798943	Independently evolved virulence effectors converge onto hubs in a plant immune system network.	Science	2011
21798943	Independently evolved virulence effectors converge onto hubs in a plant immune system network.	Science	2011
19210792	Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays.	Genome Biol	2009
19210792	Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays.	Genome Biol	2009
18486559	A link between RNA metabolism and silencing affecting Arabidopsis development.	Dev Cell	2008
18486559	A link between RNA metabolism and silencing affecting Arabidopsis development.	Dev Cell	2008
17626786	Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana.	Proc Natl Acad Sci U S A	2007
17641193	Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.	Science	2007
17626786	Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana.	Proc Natl Acad Sci U S A	2007
18160042	Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome.	Cell	2007
18160042	Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome.	Cell	2007
17641193	Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.	Science	2007
16949657	Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.	Cell	2006
16949657	Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.	Cell	2006
15753290	Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues.	Proc Natl Acad Sci U S A	2005
15607417	Applications of DNA tiling arrays for whole-genome analysis.	Genomics	2005

1 - 50 of 64

Sarah Rennie

University of Copenhagen

Career Start Year 2014

Number of shared co-authors 5

Maxwell R Mumbach

Broad Institute of MIT and Harvard

Career Start Year 2013

Number of shared co-authors 1

Sascha H Duttke

College of Veterinary Medicine, Washington State University

Career Start Year 2012

Number of shared co-authors 3

Maria J Aristizabal

Queen's University

Career Start Year 2011

Number of shared co-authors 0

Alan P Boyle

University of Michigan ann arbor

Career Start Year 2008

Number of shared co-authors 7

Nathan Sheffield (CM4AI)

University of Virginia

Career Start Year 2007

Number of shared co-authors 2

Robin Andersson

University of Copenhagen

Career Start Year 2007

Number of shared co-authors 5

Fei He

Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

Career Start Year 2007

Number of shared co-authors 1

Molly Megraw

Center for Quantitative Life Sciences, Oregon State University

Career Start Year 2006

Number of shared co-authors 2

Lingyun Song

Center for Genomic & Computational Biology, Duke University

Career Start Year 2004

Number of shared co-authors 4

Anshul Kundaje

Stanford University.

Career Start Year 2004

Number of shared co-authors 13

Manolis Kellis

Massachusetts Institute of Technology

Career Start Year 2003

Number of shared co-authors 21

Ho-Ryun Chung

Institute of Medical Bioinformatics and Biostatistics, Philipps University of Marburg

Career Start Year 2002

Number of shared co-authors 1

Albin Sandelin

University of Copenhagen

Career Start Year 2002

Number of shared co-authors 10

Michael J Buck

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 2002

Number of shared co-authors 0

Ting Wang

Washington University School of Medicine

Career Start Year 2001

Number of shared co-authors 9

Amos Tanay

Weizmann Institute of Science

Career Start Year 2001

Number of shared co-authors 2

Peter J Park

Harvard Medical School

Career Start Year 2001

Number of shared co-authors 2

Terrence S Furey

University of North Carolina at Chapel Hill

Career Start Year 2000

Number of shared co-authors 11

Gregory E Crawford

Center for Genomic & Computational Biology, Duke University

Career Start Year 1999

Number of shared co-authors 18

Uwe Ohler

Humboldt University

Career Start Year 1999

Number of shared co-authors 3

Lars M Steinmetz

Stanford University

Career Start Year 1998

Number of shared co-authors 4

Guillaume Bourque

Institute for the Advanced Study of Human Biology (ASHBi), Kyoto University

Career Start Year 1997

Number of shared co-authors 4

Boris Lenhard

MRC London Institute of Medical Sciences

Career Start Year 1996

Number of shared co-authors 9

Jason D Lieb

The University of Chicago

Career Start Year 1996

Number of shared co-authors 14

Vishwanath R Iyer

Indian Institute of Technology Bombay

Career Start Year 1995

Number of shared co-authors 9

Oliver J Rando

University of Massachusetts Chan Medical School

Career Start Year 1994

Number of shared co-authors 0

Bradley E Bernstein

Broad Institute of MIT and Harvard

Career Start Year 1994

Number of shared co-authors 6

John A Stamatoyannopoulos

Altius Institute for Biomedical Sciences

Career Start Year 1992

Number of shared co-authors 22

Steven Henikoff

Fred Hutchinson Cancer Center

Career Start Year 1974

Number of shared co-authors 5

row(s) 1 - 30 of 30

Joseph R Ecker

The Salk Institute for Biological Studies

Co-authored papers 32

Joseph R Nery

The Salk Institute for Biological Studies

Co-authored papers 16

Yupeng He

Salk Institute for Biological Studies

Co-authored papers 7

Mark A Urich

The Salk Institute for Biological Studies

Co-authored papers 7

Bing Ren

Center for Epigenomics, University of California San Diego

Co-authored papers 7

Manoj Hariharan

Co-authored papers 4

Shao-Shan Carol Huang

Salk Institute for Biological Studies

Co-authored papers 4

Matthew D Schultz

Co-authored papers 4

Robert J Schmitz

University of Georgia

Co-authored papers 4

John W Whitaker

Co-authored papers 3

Wei Wang

Co-authored papers 3

Nisha Rajagopal

Co-authored papers 3

Frederic D Bushman

Perelman School of Medicine, University of Pennsylvania

Co-authored papers 3

Jingtian Zhou

Co-authored papers 3

Danny Leung

Co-authored papers 3

Ziv Bar-Joseph

Carnegie Mellon University

Co-authored papers 3

Magnus Nordborg

Co-authored papers 3

Nancy F Hansen

National Human Genome Research Institute, National Institutes of Health

Co-authored papers 2

Ryan Lister

Co-authored papers 2

Yiing Lin

Co-authored papers 2

Curtis Palm

Stanford University

Co-authored papers 2

Wei Wang

IBM Thomas J Watson Research Center, University of California Los Angeles, University of North Carolina at Chapel Hill

Co-authored papers 2

Zizhen Yao

Allen Institute for Brain Science

Co-authored papers 2

Katherine N Chang

The Salk Institute for Biological Studies

Co-authored papers 2

Hongkui Zeng

Allen Institute for Brain Science

Co-authored papers 2

Siddarth Selvaraj

Co-authored papers 2

Shin Lin

University of Washington School of Medicine

Co-authored papers 2

Ah Young Lee

Co-authored papers 2

Nicholas J Schork

University of California San Diego

Co-authored papers 2

Michelle Nguyen

School of Medicine Stanford University

Co-authored papers 2

1 - 30

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