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Author Details

Christian J Stoeckert
Perelman School of Medicine, University of Pennsylvania
1980
151
56
PMIDPaper TitleJournal TitlePublished Year
37881831NIAGADS Alzheimer's GenomicsDB: A resource for exploring Alzheimer's disease genetic and genomic knowledge.Alzheimers Dement2024
37881831NIAGADS Alzheimer's GenomicsDB: A resource for exploring Alzheimer's disease genetic and genomic knowledge.Alzheimers Dement2024
34718728VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center.Nucleic Acids Res2022
34718728VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center.Nucleic Acids Res2022
34244718Standardization of assay representation in the Ontology for Biomedical Investigations.Database (Oxford)2021
34017831Temporal Transcriptome Analysis Reveals Dynamic Gene Expression Patterns Driving β-Cell Maturation.Front Cell Dev Biol2021
33653874A developmental lineage-based gene co-expression network for mouse pancreatic β-cells reveals a role for <i>Zfp800</i> in pancreas development.Development2021
34244718Standardization of assay representation in the Ontology for Biomedical Investigations.Database (Oxford)2021
34697637OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.Database (Oxford)2021
33653874A developmental lineage-based gene co-expression network for mouse pancreatic β-cells reveals a role for <i>Zfp800</i> in pancreas development.Development2021
34697637OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.Database (Oxford)2021
34017831Temporal Transcriptome Analysis Reveals Dynamic Gene Expression Patterns Driving β-Cell Maturation.Front Cell Dev Biol2021
32259549Phospho-proteomic discovery of novel signal transducers including thioredoxin-interacting protein as mediators of erythropoietin-dependent human erythropoiesis.Exp Hematol2020
32027948Phospho-PTM proteomic discovery of novel EPO- modulated kinases and phosphatases, including PTPN18 as a positive regulator of EPOR/JAK2 Signaling.Cell Signal2020
32259549Phospho-proteomic discovery of novel signal transducers including thioredoxin-interacting protein as mediators of erythropoietin-dependent human erythropoiesis.Exp Hematol2020
32939051Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project.Nat Rev Nephrol2020
32716361A Coordinated Approach by Public Domain Bioinformatics Resources to Aid the Fight Against Alzheimer's Disease Through Expert Curation of Key Protein Targets.J Alzheimers Dis2020
34417005A novel tool for standardizing clinical data in a semantically rich model.J Biomed Inform2020
34417005A novel tool for standardizing clinical data in a semantically rich model.J Biomed Inform2020
32027948Phospho-PTM proteomic discovery of novel EPO- modulated kinases and phosphatases, including PTPN18 as a positive regulator of EPOR/JAK2 Signaling.Cell Signal2020
32716361A Coordinated Approach by Public Domain Bioinformatics Resources to Aid the Fight Against Alzheimer's Disease Through Expert Curation of Key Protein Targets.J Alzheimers Dis2020
32939051Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project.Nat Rev Nephrol2020
29106667MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments.Nucleic Acids Res2018
30152809FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes.J Fungi (Basel)2018
29656931Synaptotagmin 4 Regulates Pancreatic β Cell Maturation by Modulating the Ca<sup>2+</sup> Sensitivity of Insulin Secretion Vesicles.Dev Cell2018
29106667MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments.Nucleic Acids Res2018
30152809FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes.J Fungi (Basel)2018
29656931Synaptotagmin 4 Regulates Pancreatic β Cell Maturation by Modulating the Ca<sup>2+</sup> Sensitivity of Insulin Secretion Vesicles.Dev Cell2018
27916240Spatial phenotyping of the endocardial endothelium as a function of intracardiac hemodynamic shear stress.J Biomech2017
27916240Spatial phenotyping of the endocardial endothelium as a function of intracardiac hemodynamic shear stress.J Biomech2017
27903906EuPathDB: the eukaryotic pathogen genomics database resource.Nucleic Acids Res2017
27903906EuPathDB: the eukaryotic pathogen genomics database resource.Nucleic Acids Res2017
27091183Integrated Regional Cardiac Hemodynamic Imaging and RNA Sequencing Reveal Corresponding Heterogeneity of Ventricular Wall Shear Stress and Endocardial Transcriptome.J Am Heart Assoc2016
27148435OBIB-a novel ontology for biobanking.J Biomed Semantics2016
27091183Integrated Regional Cardiac Hemodynamic Imaging and RNA Sequencing Reveal Corresponding Heterogeneity of Ventricular Wall Shear Stress and Endocardial Transcriptome.J Am Heart Assoc2016
27128319The Ontology for Biomedical Investigations.PLoS One2016
27851966Pancreatic Inflammation Redirects Acinar to β Cell Reprogramming.Cell Rep2016
27851966Pancreatic Inflammation Redirects Acinar to β Cell Reprogramming.Cell Rep2016
27148435OBIB-a novel ontology for biobanking.J Biomed Semantics2016
27128319The Ontology for Biomedical Investigations.PLoS One2016
26148682Arterial endothelial methylome: differential DNA methylation in athero-susceptible disturbed flow regions in vivo.BMC Genomics2015
26259944A Framework for Global Collaborative Data Management for Malaria Research.Am J Trop Med Hyg2015
26148682Arterial endothelial methylome: differential DNA methylation in athero-susceptible disturbed flow regions in vivo.BMC Genomics2015
26259944A Framework for Global Collaborative Data Management for Malaria Research.Am J Trop Med Hyg2015
24413522Ontodog: a web-based ontology community view generation tool.Bioinformatics2014
25852852CLO: The cell line ontology.J Biomed Semantics2014
24413522Ontodog: a web-based ontology community view generation tool.Bioinformatics2014
24936976Standardized metadata for human pathogen/vector genomic sequences.PLoS One2014
25053427Insm1 promotes endocrine cell differentiation by modulating the expression of a network of genes that includes Neurog3 and Ripply3.Development2014
24874278Emerging topic: flow-related epigenetic regulation of endothelial phenotype through DNA methylation.Vascul Pharmacol2014
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Collaborators

Elisabetta Manduchi
Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia
Co-authored papers 29
Brian P Brunk
University of Pennsylvania
Co-authored papers 25
David S Roos
University of Pennsylvania
Co-authored papers 24
Gregory R Grant
Perelman School of Medicine, University of Pennsylvania Philadelphia
Co-authored papers 24
Jessica C Kissinger
University of Georgia
Co-authored papers 20
Helen Parkinson
European Bioinformatics Institute
Co-authored papers 19
John Brestelli
University of Pennsylvania
Co-authored papers 17
Catherine A Ball
Co-authored papers 16
Deborah F Pinney
University of Pennsylvania
Co-authored papers 14
Alvis Brazma
European Bioinformatics Institute
Co-authored papers 14
John Quackenbush
Harvard T. H. Chan School of Public Health
Co-authored papers 13
Jie Zheng
University of Pennsylvania Perelman School of Medicine
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Susanna-Assunta Sansone
Oxford e-Research Centre, University of Oxford
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Jonathan Schug
University of Pennsylvania Perelman School of Medicine
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Bindu Gajria
University of Pennsylvania
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Patricia L Whetzel
University of Colorado Anschutz Medical Campus
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Paul T Spellman
Oregon Health & Science University Hospital.
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Klaus H Kaestner
Department of Genetics and Institute for Diabetes, University of Pennsylvania
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Angel Pizarro
The Institute for Translational Medicine and Therapeutics, University of Pennsylvania
Co-authored papers 9
Jonathan Crabtree
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 8
Philippe Rocca-Serra
University of Oxford
Co-authored papers 8
Sherman M Weissman
Co-authored papers 7
Chris F Taylor
European Molecular Biology Laboratory- European Bioinformatics Institute
Co-authored papers 7
Martin Ringwald
Max-Planck-Institut fur Immunbiologie
Co-authored papers 7
Francis S Collins
University of Michigan ann arbor
Co-authored papers 6
Li Li
Center for Bioinformatics, University of Pennsylvania
Co-authored papers 6
Yongqun He
University of Michigan Medical School ann arbor
Co-authored papers 6
Jennifer Fostel
National Institute of Environmental Health Sciences
Co-authored papers 6
Ryan R Brinkman
University of British Columbia
Co-authored papers 5
Sharon J Diskin
Children's Hospital of Philadelphia
Co-authored papers 5
Release 1.2