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Author Details

Jo??o P G L M Rodrigues
Stanford University
1999
51
28
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36181566Theoretical analysis of the effects of counterions on the supramolecular arrangement of sulfamethoxazole.J Mol Model2022
36181566Theoretical analysis of the effects of counterions on the supramolecular arrangement of sulfamethoxazole.J Mol Model2022
35595165An Electrostatically-steered Conformational Selection Mechanism Promotes SARS-CoV-2 Spike Protein Variation.J Mol Biol2022
35595165An Electrostatically-steered Conformational Selection Mechanism Promotes SARS-CoV-2 Spike Protein Variation.J Mol Biol2022
33111403PDB-tools web: A user-friendly interface for the manipulation of PDB files.Proteins2021
33619481Predicting the zoonotic capacity of mammals to transmit SARS-CoV-2.bioRxiv2021
34195226Predicting the Specificity- Determining Positions of Receptor Tyrosine Kinase Axl.Front Mol Biosci2021
33111403PDB-tools web: A user-friendly interface for the manipulation of PDB files.Proteins2021
34784766Predicting the zoonotic capacity of mammals to transmit SARS-CoV-2.Proc Biol Sci2021
33619481Predicting the zoonotic capacity of mammals to transmit SARS-CoV-2.bioRxiv2021
34784766Predicting the zoonotic capacity of mammals to transmit SARS-CoV-2.Proc Biol Sci2021
34195226Predicting the Specificity- Determining Positions of Receptor Tyrosine Kinase Axl.Front Mol Biosci2021
32241888Bacterial flagellar motor PL-ring disassembly subcomplexes are widespread and ancient.Proc Natl Acad Sci U S A2020
32241888Bacterial flagellar motor PL-ring disassembly subcomplexes are widespread and ancient.Proc Natl Acad Sci U S A2020
32577636Insights on cross-species transmission of SARS-CoV-2 from structural modeling.bioRxiv2020
33270653Insights on cross-species transmission of SARS-CoV-2 from structural modeling.PLoS Comput Biol2020
32938937Structural models of human ACE2 variants with SARS-CoV-2 Spike protein for structure-based drug design.Sci Data2020
33270653Insights on cross-species transmission of SARS-CoV-2 from structural modeling.PLoS Comput Biol2020
32577636Insights on cross-species transmission of SARS-CoV-2 from structural modeling.bioRxiv2020
32938937Structural models of human ACE2 variants with SARS-CoV-2 Spike protein for structure-based drug design.Sci Data2020
30504785Publisher Correction: Structural insights into binding specificity, efficacy and bias of a β<sub>2</sub>AR partial agonist.Nat Chem Biol2019
30504785Publisher Correction: Structural insights into binding specificity, efficacy and bias of a β<sub>2</sub>AR partial agonist.Nat Chem Biol2019
31539250Less Is More: Coarse-Grained Integrative Modeling of Large Biomolecular Assemblies with HADDOCK.J Chem Theory Comput2019
31539250Less Is More: Coarse-Grained Integrative Modeling of Large Biomolecular Assemblies with HADDOCK.J Chem Theory Comput2019
28831657Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2.J Comput Aided Mol Des2018
28831657Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2.J Comput Aided Mol Des2018
30104359Proteomic analysis of monolayer-integrated proteins on lipid droplets identifies amphipathic interfacial α-helical membrane anchors.Proc Natl Acad Sci U S A2018
30327561Structural insights into binding specificity, efficacy and bias of a β<sub>2</sub>AR partial agonist.Nat Chem Biol2018
29942005Defining distance restraints in HADDOCK.Nat Protoc2018
29619777The solution structure of monomeric CCL5 in complex with a doubly sulfated N-terminal segment of CCR5.FEBS J2018
29254737Augmenting Research, Education, and Outreach with Client-Side Web Programming.Trends Biotechnol2018
29688323SILAC-based phosphoproteomics reveals new PP2A-Cdc55-regulated processes in budding yeast.Gigascience2018
30705752pdb-tools: a swiss army knife for molecular structures.F1000Res2018
30104359Proteomic analysis of monolayer-integrated proteins on lipid droplets identifies amphipathic interfacial α-helical membrane anchors.Proc Natl Acad Sci U S A2018
29942005Defining distance restraints in HADDOCK.Nat Protoc2018
30705752pdb-tools: a swiss army knife for molecular structures.F1000Res2018
30327561Structural insights into binding specificity, efficacy and bias of a β<sub>2</sub>AR partial agonist.Nat Chem Biol2018
29688323SILAC-based phosphoproteomics reveals new PP2A-Cdc55-regulated processes in budding yeast.Gigascience2018
29619777The solution structure of monomeric CCL5 in complex with a doubly sulfated N-terminal segment of CCR5.FEBS J2018
29254737Augmenting Research, Education, and Outreach with Client-Side Web Programming.Trends Biotechnol2018
27013645Template-based protein-protein docking exploiting pairwise interfacial residue restraints.Brief Bioinform2017
28431242Structural and Functional Analysis of a β<sub>2</sub>-Adrenergic Receptor Complex with GRK5.Cell2017
28730688Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).Proteins2017
28685953Supramolecular Organization and Functional Implications of K<sup>+</sup> â¿¿Channel Clusters in Membranes.Angew Chem Int Ed Engl2017
28805795M3: an integrative framework for structure determination of molecular machines.Nat Methods2017
27013645Template-based protein-protein docking exploiting pairwise interfacial residue restraints.Brief Bioinform2017
27802573Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.Proteins2017
28236236Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK.Methods Mol Biol2017
28431242Structural and Functional Analysis of a β<sub>2</sub>-Adrenergic Receptor Complex with GRK5.Cell2017
28236236Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK.Methods Mol Biol2017
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Collaborators

Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 27
Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg
Co-authored papers 16
Dokuz Eylul University
Co-authored papers 11
Oncode Institute & Hubrecht Institute-KNAW and University Medical Center Utrecht
Co-authored papers 9
Co-authored papers 9
Utrecht University
Co-authored papers 6
Stanford University
Co-authored papers 5
Co-authored papers 5
Inscopix Inc.
Co-authored papers 5
Roche Pharma Research and Early Development
Co-authored papers 5
Utrecht University
Co-authored papers 5
Co-authored papers 4
Utrecht University
Co-authored papers 3
Co-authored papers 3
Utrecht University
Co-authored papers 3
University of Massachusetts Medical School
Co-authored papers 2
Huazhong University of Science and Technology
Co-authored papers 2
Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 2
University of Illinois Chicago
Co-authored papers 2
Purdue University
Co-authored papers 2
Skolkovo Institute of Science and Technology
Co-authored papers 2
University of Maryland Institute for Bioscience and Biotechnology Research
Co-authored papers 2
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 2
Visterra Inc.
Co-authored papers 2
Utrecht University
Co-authored papers 2
Columbia University
Co-authored papers 2
GSK Medicines Research Centre
Co-authored papers 2
Boston University
Co-authored papers 2
Institute for Research in Immunology and Cancer, Universite de Montreal
Co-authored papers 2
VIB-VUB Center for Structural Biology
Co-authored papers 2