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Author Details

Pekka Ruusuvuori
Institute of Biomedicine, University of Turku
2005
56
17
PMIDPaper TitleJournal TitlePublished Year
36801642Unstained Tissue Imaging and Virtual Hematoxylin and Eosin Staining of Histologic Whole Slide Images.Lab Invest2023
37652005Deep learning transforms colorectal cancer biomarker prediction from histopathology images.Cancer Cell2023
37932833Genomic characterization of IDH-mutant astrocytoma progression to grade 4 in the treatment setting.Acta Neuropathol Commun2023
37235626Domain-specific transfer learning in the automated scoring of tumor-stroma ratio from histopathological images of colorectal cancer.PLoS One2023
37223268The effect of neural network architecture on virtual H&E staining: Systematic assessment of histological feasibility.Patterns (N Y)2023
36645163Interobserver reproducibility of cribriform cancer in prostate needle biopsies and validation of International Society of Urological Pathology criteria.Histopathology2023
35228520miR-32 promotes MYC-driven prostate cancer.Oncogenesis2022
35449363Detection of perineural invasion in prostate needle biopsies with deep neural networks.Virchows Arch2022
36522311Estimating diagnostic uncertainty in artificial intelligence assisted pathology using conformal prediction.Nat Commun2022
35128089Spatial analysis of histology in 3D: quantification and visualization of organ and tumor level tissue environment.Heliyon2022
33211668Generalized Fixation Invariant Nuclei Detection Through Domain Adaptation Based Deep Learning.IEEE J Biomed Health Inform2021
33670112Convolutional Neural Network-Based Artificial Intelligence for Classification of Protein Localization Patterns.Biomolecules2021
33534005Interobserver reproducibility of perineural invasion of prostatic adenocarcinoma in needle biopsies.Virchows Arch2021
33892405Building a central repository landmarks a new era for artificial intelligence-assisted digital pathology development in Europe.Eur J Cancer2021
34393083Artificial Intelligence for Diagnosis and Gleason Grading of Prostate Cancer in Biopsies-Current Status and Next Steps.Eur Urol Focus2021
34686173Virtual reality for 3D histology: multi-scale visualization of organs with interactive feature exploration.BMC Cancer2021
34108086The emerging role of artificial intelligence in the reporting of prostate pathology.Pathology2021
34341074Predicting Molecular Phenotypes from Histopathology Images: A Transcriptome-Wide Expression-Morphology Analysis in Breast Cancer.Cancer Res2021
34358287OpenPhi: an interface to access Philips iSyntax whole slide images for computational pathology.Bioinformatics2021
31398111Cytokeratin-Supervised Deep Learning for Automatic Recognition of Epithelial Cells in Breast Cancers Stained for ER, PR, and Ki-67.IEEE Trans Med Imaging2020
31926806Artificial intelligence for diagnosis and grading of prostate cancer in biopsies: a population-based, diagnostic study.Lancet Oncol2020
33218352Single cell characterization of B-lymphoid differentiation and leukemic cell states during chemotherapy in ETV6-RUNX1-positive pediatric leukemia identifies drug-targetable transcription factor activities.Genome Med2020
32275587ANHIR: Automatic Non-Rigid Histological Image Registration Challenge.IEEE Trans Med Imaging2020
32164385Glioblastoma Multiforme Stem Cell Cycle Arrest by Alkylaminophenol Through the Modulation of EGFR and CSC Signaling Pathways.Cells2020
30767778Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks.BMC Bioinformatics2019
31730483Phosphorylation of NFATC1 at PIM1 target sites is essential for its ability to promote prostate cancer cell migration and invasion.Cell Commun Signal2019
319464903D-Printed Whole Prostate Models with Tumor Hotspots Using Dual-Extruder Printer.Annu Int Conf IEEE Eng Med Biol Soc2019
28984675Feasibility of Prostate PAXgene Fixation for Molecular Research and Diagnostic Surgical Pathology: Comparison of Matched Fresh Frozen, FFPE, and PFPE Tissues.Am J Surg Pathol2018
29684099Comparative analysis of tissue reconstruction algorithms for 3D histology.Bioinformatics2018
27665309Echovirus 1 internalization negatively regulates epidermal growth factor receptor downregulation.Cell Microbiol2017
28379477Strong FGFR3 staining is a marker for FGFR3 fusions in diffuse gliomas.Neuro Oncol2017
28426134Metastasis detection from whole slide images using local features and random forests.Cytometry A2017
28317907Analysis of spatial heterogeneity in normal epithelium and preneoplastic alterations in mouse prostate tumor models.Sci Rep2017
29234806Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer.JAMA2017
28827140In Vivo Expression of miR-32 Induces Proliferation in Prostate Epithelium.Am J Pathol2017
27081305Flow Cytometry-Based Classification in Cancer Research: A View on Feature Selection.Cancer Inform2016
27922735Virtual cell imaging: A review on simulation methods employed in image cytometry.Cytometry A2016
26955503Feature-based analysis of mouse prostatic intraepithelial neoplasia in histological tissue sections.J Pathol Inform2016
25749039Recurrent SKIL-activating rearrangements in ETS-negative prostate cancer.Oncotarget2015
24447135Quantitative analysis of colony morphology in yeast.Biotechniques2014
24918601Unidirectional P-body transport during the yeast cell cycle.PLoS One2014
24728133Quantitative analysis of dynamic association in live biological fluorescent samples.PLoS One2014
24023658Leukemia prediction using sparse logistic regression.PLoS One2013
24267488Multi-scale Gaussian representation and outline-learning based cell image segmentation.BMC Bioinformatics2013
22738319Bioactive acellular implant induces angiogenesis and adipogenesis and sustained soft tissue restoration in vivo.Tissue Eng Part A2012
20631160Probabilistic analysis of gene expression measurements from heterogeneous tissues.Bioinformatics2010
20498836Reconstruction and validation of RefRec: a global model for the yeast molecular interaction network.PLoS One2010
20465797Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images.BMC Bioinformatics2010
19847301Bright field microscopy as an alternative to whole cell fluorescence in automated analysis of macrophage images.PLoS One2009
17649914Computational framework for simulating fluorescence microscope images with cell populations.IEEE Trans Med Imaging2007
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Collaborators

Leena Latonen
Foundation for the Finnish Cancer Institute
Co-authored papers 20
Kimmo Kartasalo
Karolinska Institutet
Co-authored papers 17
Matti Nykter
Prostate Cancer Research Center, Tampere University and Tays Cancer Center
Co-authored papers 15
Tapio Visakorpi
Prostate Cancer Research Center, Tampere University and Tays Cancer Center
Co-authored papers 11
Mira Valkonen
Tampere University
Co-authored papers 9
Lars Egevad
Karolinska Institute
Co-authored papers 8
Kaisa Liimatainen
Tampere University
Co-authored papers 6
Aim??e M Dudley
Pacific Northwest Research Institute
Co-authored papers 3
Ilya Shmulevich
Institute for Systems Biology
Co-authored papers 3
Cecilia Lindskog
Uppsala University
Co-authored papers 3
George Steven Bova
Prostate Cancer Research Center, Tampere University and Tays Cancer Center
Co-authored papers 2
Wei Zhang
University of Manchester
Co-authored papers 2
Theodorus H van der Kwast
University Health Network, University of Toronto
Co-authored papers 2
Geert Litjens
Radboud Institute for Health Sciences, Radboud University Medical Center
Co-authored papers 2
Matti Annala
University of British Columbia
Co-authored papers 2
Johan Lindberg
Karolinska Institute
Co-authored papers 2
Gloria Bueno
Hospital Clinico Universitario "Lozano Blesa"
Co-authored papers 2
Lucas Pelkmans
University of Zurich
Co-authored papers 1
Peter Bult
Radboud University Medical Center
Co-authored papers 1
Mustafa ??mit ??ner
Middle East Technical University
Co-authored papers 1
Oscar D??niz
University of Castilla-La Mancha
Co-authored papers 1
Paul J van Diest
University Medical Center Utrecht
Co-authored papers 1
Aoxiao Zhong
Massachusetts General Hospital, Harvard University
Co-authored papers 1
Matt Berseth
NLP Logix LLC
Co-authored papers 1
Muhammad Shaaban
Huazhong Agricultural University
Co-authored papers 1
Rui Ven??ncio
Sorbonne University, Pierre and Marie Curie University
Co-authored papers 1
Geert J L H van Leenders
Erasmus MC Cancer Institute, University Medical Center
Co-authored papers 1
Hady Ahmady Phoulady
California State University
Co-authored papers 1
Ami George
Technical University of Munich
Co-authored papers 1
Peter A Humphrey
Yale University School of Medicine
Co-authored papers 1
Release 1.2