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| 37108472 | First Draft Genome Assembly of Root-Lesion Nematode <i>Pratylenchus scribneri</i> Generated Using Long-Read Sequencing. | Int J Mol Sci | 2023 |
| 38076297 | BOSC 2023, the 24th annual Bioinformatics Open Source Conference. | F1000Res | 2023 |
| 35254127 | Complete Genome Sequences of Three Staphylococcus haemolyticus Strains Isolated from the Lung of a TGFβ1 Transgenic Mouse with Lung Fibrosis. | Microbiol Resour Announc | 2022 |
| 35791353 | Longitudinal Analysis of SARS-CoV-2 Vaccine Breakthrough Infections Reveals Limited Infectious Virus Shedding and Restricted Tissue Distribution. | Open Forum Infect Dis | 2022 |
| 35484231 | Daily longitudinal sampling of SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness. | Nat Microbiol | 2022 |
| 36402955 | H3AGWAS: a portable workflow for genome wide association studies. | BMC Bioinformatics | 2022 |
| 35965387 | Effects of a mildly cooked human-grade dog diet on gene expression, skin and coat health measures, and fecal microbiota of healthy adult dogs. | J Anim Sci | 2022 |
| 34282424 | Daily sampling of early SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness. | medRxiv | 2021 |
| 33552012 | Pursuing Advances in DNA Sequencing Technology to Solve a Complex Genomic Jigsaw Puzzle: The Agglutinin-Like Sequence (<i>ALS</i>) Genes of <i>Candida tropicalis</i>. | Front Microbiol | 2021 |
| 33658330 | <i>In Vivo</i> Competitions between Fibrobacter succinogenes, Ruminococcus flavefaciens, and Ruminoccus albus in a Gnotobiotic Sheep Model Revealed by Multi-Omic Analyses. | mBio | 2021 |
| 33630830 | Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa. | PLoS Comput Biol | 2021 |
| 34970511 | Using Genomics to Shape the Definition of the Agglutinin-Like Sequence (<i>ALS</i>) Family in the Saccharomycetales. | Front Cell Infect Microbiol | 2021 |
| 34494028 | Longitudinal analysis of SARS-CoV-2 vaccine breakthrough infections reveal limited infectious virus shedding and restricted tissue distribution. | medRxiv | 2021 |
| 34721839 | BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference. | F1000Res | 2021 |
| 34564366 | Subacute Exposure to an Environmentally Relevant Dose of Di-(2-ethylhexyl) Phthalate during Gestation Alters the Cecal Microbiome, but Not Pregnancy Outcomes in Mice. | Toxics | 2021 |
| 32269230 | DNA punch cards for storing data on native DNA sequences via enzymatic nicking. | Nat Commun | 2020 |
| 35373025 | <i>In Vivo</i> Entombment of Bacteria and Fungi during Calcium Oxalate, Brushite, and Struvite Urolithiasis. | Kidney360 | 2020 |
| 32210242 | A Staphylococcus pro-apoptotic peptide induces acute exacerbation of pulmonary fibrosis. | Nat Commun | 2020 |
| 32109587 | Soybean aphid biotype 1 genome: Insights into the invasive biology and adaptive evolution of a major agricultural pest. | Insect Biochem Mol Biol | 2020 |
| 31105652 | Agglutinin-Like Sequence (<i>ALS</i>) Genes in the <i>Candida parapsilosis</i> Species Complex: Blurring the Boundaries Between Gene Families That Encode Cell-Wall Proteins. | Front Microbiol | 2019 |
| 32025286 | BOSC 2019, the 20th annual Bioinformatics Open Source Conference. | F1000Res | 2019 |
| 31278684 | Sharing Programming Resources Between Bio* Projects. | Methods Mol Biol | 2019 |
| 30737348 | Clostridium scindens ATCC 35704: Integration of Nutritional Requirements, the Complete Genome Sequence, and Global Transcriptional Responses to Bile Acids. | Appl Environ Microbiol | 2019 |
| 31038352 | Physiology, Metabolism, and Fossilization of Hot-Spring Filamentous Microbial Mats. | Astrobiology | 2019 |
| 31173595 | Host species and site of collection shape the microbiota of Rift Valley fever vectors in Kenya. | PLoS Negl Trop Dis | 2019 |
| 29580210 | Defense against territorial intrusion is associated with DNA methylation changes in the honey bee brain. | BMC Genomics | 2018 |
| 30107817 | Mosquito microbiota cluster by host sampling location. | Parasit Vectors | 2018 |
| 30210780 | The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018). | F1000Res | 2018 |
| 29954916 | Genome Sequence of the Soybean Cyst Nematode (Heterodera glycines) Endosymbiont "Candidatus Cardinium hertigii" Strain cHgTN10. | Genome Announc | 2018 |
| 29617190 | Bile acid oxidation by Eggerthella lenta strains C592 and DSM 2243<sup>T</sup>. | Gut Microbes | 2018 |
| 28570565 | Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network. | PLoS Comput Biol | 2017 |
| 28300212 | Effect of pesticides on microbial communities in container aquatic habitats. | Sci Rep | 2017 |
| 29142254 | A soft selective sweep during rapid evolution of gentle behaviour in an Africanized honeybee. | Nat Commun | 2017 |
| 29118973 | The 2017 Bioinformatics Open Source Conference (BOSC). | F1000Res | 2017 |
| 28785866 | Whole genome comparative analysis of four Georgian grape cultivars. | Mol Genet Genomics | 2017 |
| 28812709 | Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes. | Nat Ecol Evol | 2017 |
| 26920945 | Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis. | BMC Genomics | 2016 |
| 27781083 | The 2016 Bioinformatics Open Source Conference (BOSC). | F1000Res | 2016 |
| 27803309 | Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize. | Plant Cell | 2016 |
| 27267263 | Erratum to: Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis. | BMC Genomics | 2016 |
| 27142817 | Xylan degradation by the human gut Bacteroides xylanisolvens XB1A(T) involves two distinct gene clusters that are linked at the transcriptional level. | BMC Genomics | 2016 |
| 26914653 | The 2015 Bioinformatics Open Source Conference (BOSC 2015). | PLoS Comput Biol | 2016 |
| 25986459 | Glyphosate's impact on vegetative growth in leafy spurge identifies molecular processes and hormone cross-talk associated with increased branching. | BMC Genomics | 2015 |
| 26426747 | Plasma Exosomal miRNAs in Persons with and without Alzheimer Disease: Altered Expression and Prospects for Biomarkers. | PLoS One | 2015 |
| 26203426 | IMA Genome-F 4: Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata. | IMA Fungus | 2015 |
| 26240606 | Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts. | Evol Appl | 2015 |
| 24618462 | The Bio-Community Perl toolkit for microbial ecology. | Bioinformatics | 2014 |
| 22399473 | Sharing programming resources between Bio* projects through remote procedure call and native call stack strategies. | Methods Mol Biol | 2012 |
| 22564763 | Mono-(2-ethylhexyl)-phthalate (MEHP) affects ERK-dependent GDNF signalling in mouse stem-progenitor spermatogonia. | Toxicology | 2012 |
| 21738707 | Gain, loss and divergence in primate zinc-finger genes: a rich resource for evolution of gene regulatory differences between species. | PLoS One | 2011 |