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Author Details

Anna Vangone
Roche Pharma Research and Early Development
2011
31
17
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34838187Paratope states in solution improve structure prediction and docking.Structure2022
34838187Paratope states in solution improve structure prediction and docking.Structure2022
33946306D936Y and Other Mutations in the Fusion Core of the SARS-CoV-2 Spike Protein Heptad Repeat 1: Frequency, Geographical Distribution, and Structural Effect.Molecules2021
36699405A random forest classifier for protein-protein docking models.Bioinform Adv2021
33946306D936Y and Other Mutations in the Fusion Core of the SARS-CoV-2 Spike Protein Heptad Repeat 1: Frequency, Geographical Distribution, and Structural Effect.Molecules2021
34383892Co-evolutionary distance predictions contain flexibility information.Bioinformatics2021
36699405A random forest classifier for protein-protein docking models.Bioinform Adv2021
34383892Co-evolutionary distance predictions contain flexibility information.Bioinformatics2021
31886559An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45.Proteins2020
31886559An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45.Proteins2020
30417935iSEE: Interface structure, evolution, and energy-based machine learning predictor of binding affinity changes upon mutations.Proteins2019
30417935iSEE: Interface structure, evolution, and energy-based machine learning predictor of binding affinity changes upon mutations.Proteins2019
31141126PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes.Bioinformatics2019
31051038Large-scale prediction of binding affinity in protein-small ligand complexes: the PRODIGY-LIG web server.Bioinformatics2019
31141126PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes.Bioinformatics2019
31051038Large-scale prediction of binding affinity in protein-small ligand complexes: the PRODIGY-LIG web server.Bioinformatics2019
28831657Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2.J Comput Aided Mol Des2018
28831657Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2.J Comput Aided Mol Des2018
30497368Distinguishing crystallographic from biological interfaces in protein complexes: role of intermolecular contacts and energetics for classification.BMC Bioinformatics2018
29799470Structural Basis for Mutations of Human Aquaporins Associated to Genetic Diseases.Int J Mol Sci2018
30497368Distinguishing crystallographic from biological interfaces in protein complexes: role of intermolecular contacts and energetics for classification.BMC Bioinformatics2018
29799470Structural Basis for Mutations of Human Aquaporins Associated to Genetic Diseases.Int J Mol Sci2018
27802573Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.Proteins2017
34458447PRODIGY: A Contact-based Predictor of Binding Affinity in Protein-protein Complexes.Bio Protoc2017
28730688Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).Proteins2017
28416722Correction: Prevention of Vγ9Vδ2 T Cell Activation by a Vγ9Vδ2 TCR Nanobody.J Immunol2017
27802573Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.Proteins2017
27895170Prevention of Vγ9Vδ2 T Cell Activation by a Vγ9Vδ2 TCR Nanobody.J Immunol2017
34458447PRODIGY: A Contact-based Predictor of Binding Affinity in Protein-protein Complexes.Bio Protoc2017
28416722Correction: Prevention of Vγ9Vδ2 T Cell Activation by a Vγ9Vδ2 TCR Nanobody.J Immunol2017
28730688Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).Proteins2017
27895170Prevention of Vγ9Vδ2 T Cell Activation by a Vγ9Vδ2 TCR Nanobody.J Immunol2017
26968364Analysis of the interface variability in NMR structure ensembles of protein-protein complexes.J Struct Biol2016
26968364Analysis of the interface variability in NMR structure ensembles of protein-protein complexes.J Struct Biol2016
27284087Exploring the interplay between experimental methods and the performance of predictors of binding affinity change upon mutations in protein complexes.Protein Eng Des Sel2016
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
27503228PRODIGY: a web server for predicting the binding affinity of protein-protein complexes.Bioinformatics2016
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
27503228PRODIGY: a web server for predicting the binding affinity of protein-protein complexes.Bioinformatics2016
27284087Exploring the interplay between experimental methods and the performance of predictors of binding affinity change upon mutations in protein complexes.Protein Eng Des Sel2016
25535242CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts.Bioinformatics2015
25535242CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts.Bioinformatics2015
26231283Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.J Mol Biol2015
26193119Contacts-based prediction of binding affinity in protein-protein complexes.Elife2015
26231283Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.J Mol Biol2015
26193119Contacts-based prediction of binding affinity in protein-protein complexes.Elife2015
23589399Fragment-based modeling of membrane protein loops: successes, failures, and prospects for the future.Proteins2014
24393662A recurrent Gly43Asp substitution in coagulation Factor X rigidifies its catalytic pocket and impairs catalytic activity and intracellular trafficking.Thromb Res2014
23589399Fragment-based modeling of membrane protein loops: successes, failures, and prospects for the future.Proteins2014
25076134Structural basis for the recognition in an idiotype-anti-idiotype antibody complex related to celiac disease.PLoS One2014
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Collaborators

Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 16
University of Naples "Parthenope"
Co-authored papers 13
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 11
Utrecht University
Co-authored papers 8
Co-authored papers 7
Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg
Co-authored papers 5
Stanford University
Co-authored papers 5
Co-authored papers 5
Oncode Institute & Hubrecht Institute-KNAW and University Medical Center Utrecht
Co-authored papers 5
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 3
Co-authored papers 3
Inscopix Inc.
Co-authored papers 3
Dokuz Eylul University
Co-authored papers 3
Utrecht University
Co-authored papers 3
Utrecht University
Co-authored papers 3
Utrecht University
Co-authored papers 3
University of Massachusetts Medical School
Co-authored papers 2
University of Gdansk
Co-authored papers 2
The Francis Crick Institute
Co-authored papers 2
Co-authored papers 2
Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)
Co-authored papers 2
Co-authored papers 2
Francis Crick Institute
Co-authored papers 2
University of Maryland Institute for Bioscience and Biotechnology Research
Co-authored papers 2
Visterra Inc.
Co-authored papers 2
GSK Medicines Research Centre
Co-authored papers 2
Amgen Inc.
Co-authored papers 1
Universite de Lorraine, CNRS
Co-authored papers 1
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 1
The University of Kansas
Co-authored papers 1