Author details

Full Name

Elaine C Meng

Affiliation

Department of Pharmaceutical Chemistry, University of California San Francisco

ORCID

Career Start Year

1990

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36759942	The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information.	Bioinformatics	2023
32881101	UCSF ChimeraX: Structure visualization for researchers, educators, and developers.	Protein Sci	2021
34912541	scNetViz: from single cells to networks using Cytoscape.	F1000Res	2021
28710774	UCSF ChimeraX: Meeting modern challenges in visualization and analysis.	Protein Sci	2018
29964044	Molecular Visualization on the Holodeck.	J Mol Biol	2018
30097089	Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain.	Methods Enzymol	2018
28605775	Biocuration in the structure-function linkage database: the anatomy of a superfamily.	Database (Oxford)	2017
28365730	Biocuration in the structure-function linkage database: the anatomy of a superfamily.	Database (Oxford)	2017
24271399	The Structure-Function Linkage Database.	Nucleic Acids Res	2014
24861624	Enhancing UCSF Chimera through web services.	Nucleic Acids Res	2014
21963794	UCSF Chimera, MODELLER, and IMP: an integrated modeling system.	J Struct Biol	2012
21097780	ModBase, a database of annotated comparative protein structure models, and associated resources.	Nucleic Acids Res	2011
21458983	Topological variation in the evolution of new reactions in functionally diverse enzyme superfamilies.	Curr Opin Struct Biol	2011
20525940	Computational tools for the interactive exploration of proteomic and structural data.	Mol Cell Proteomics	2010
19369428	DOCK 6: combining techniques to model RNA-small molecule complexes.	RNA	2009
17658942	Evolution of function in the "two dinucleotide binding domains" flavoproteins.	PLoS Comput Biol	2007
16381950	The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse.	Nucleic Acids Res	2006
16836757	Tools for integrated sequence-structure analysis with UCSF Chimera.	BMC Bioinformatics	2006
16489747	Leveraging enzyme structure-function relationships for functional inference and experimental design: the structure-function linkage database.	Biochemistry	2006
16344478	Apolipoprotein (apo) E4 enhances amyloid beta peptide production in cultured neuronal cells: apoE structure as a potential therapeutic target.	Proc Natl Acad Sci U S A	2005
14660595	Evolutionary trace of G protein-coupled receptors reveals clusters of residues that determine global and class-specific functions.	J Biol Chem	2004
15264254	UCSF Chimera--a visualization system for exploratory research and analysis.	J Comput Chem	2004
15146493	Superfamily active site templates.	Proteins	2004
12520002	BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.	Nucleic Acids Res	2003
12520064	The Structure Superposition Database.	Nucleic Acids Res	2003
12453150	Constitutive activation and endocytosis of the complement factor 5a receptor: evidence for multiple activated conformations of a G protein-coupled receptor.	Traffic	2002
11062244	An activation switch in the ligand binding pocket of the C5a receptor.	J Biol Chem	2001
11344266	Mutant G protein alpha subunit activated by Gbeta gamma: a model for receptor activation?	Proc Natl Acad Sci U S A	2001
11698103	Receptor activation: what does the rhodopsin structure tell us?	Trends Pharmacol Sci	2001
10950717	Structure. Rhodopsin sees the light.	Science	2000
10336477	C5a receptor activation. Genetic identification of critical residues in four transmembrane helices.	J Biol Chem	1999
10358054	Similar structures and shared switch mechanisms of the beta2-adrenoceptor and the parathyroid hormone receptor. Zn(II) bridges between helices III and VI block activation.	J Biol Chem	1999
7964929	Evaluating docked complexes with the HINT exponential function and empirical atomic hydrophobicities.	J Comput Aided Mol Des	1994
8340363	Structure of a non-peptide inhibitor complexed with HIV-1 protease. Developing a cycle of structure-based drug design.	J Biol Chem	1993
8272425	Orientational sampling and rigid-body minimization in molecular docking.	Proteins	1993
2258897	A novel synthesis of xanthines: support for a new binding mode for xanthines with respect to adenosine at adenosine receptors.	J Med Chem	1990

1 - 36 of 36

Suwen Zhao

ShanghaiTech University, China iHuman Institute

Career Start Year 2006

Number of shared co-authors 6

Marc C Deller

Incyte Corporation

Career Start Year 2000

Number of shared co-authors 1

Jeffrey B Bonanno

Albert Einstein College of Medicine

Career Start Year 1999

Number of shared co-authors 8

Judith Klein-Seetharaman

School of Molecular Sciences & College of Health Solutions, Arizona State University

Career Start Year 1999

Number of shared co-authors 2

David R Hall

Diamond Light Source Ltd, Harwell Science & Innovation Campus

Career Start Year 1998

Number of shared co-authors 2

Roberto Sanchez

Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai

Career Start Year 1996

Number of shared co-authors 4

Paul D Adams

Lawrence Berkeley National Laboratory

Career Start Year 1994

Number of shared co-authors 6

Diana R Tomchick

University of Texas Southwestern Medical Center

Career Start Year 1993

Number of shared co-authors 1

Gye Won Han

Bridge Institute, University of Southern California

Career Start Year 1991

Number of shared co-authors 0

Se??n I O'Donoghue

University of NSW

Career Start Year 1991

Number of shared co-authors 2

Carlos J Camacho

University of Pittsburgh

Career Start Year 1990

Number of shared co-authors 1

Gerard J Kleywegt

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1990

Number of shared co-authors 6

Ram Samudrala

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1990

Number of shared co-authors 2

Wladek Minor

University of Virginia

Career Start Year 1989

Number of shared co-authors 4

Roland L Dunbrack

Fox Chase Cancer Center

Career Start Year 1989

Number of shared co-authors 4

Steven C Almo

Albert Einstein College of Medicine

Career Start Year 1988

Number of shared co-authors 13

Miriam Eisenstein

Weizmann Institute of Science

Career Start Year 1988

Number of shared co-authors 2

Raymond C Stevens

iHuman Institute, ShanghaiTech University

Career Start Year 1988

Number of shared co-authors 4

Christopher W V Hogue

National University of Singapore

Career Start Year 1987

Number of shared co-authors 2

Mark S Johnson

Abo Akademi University

Career Start Year 1985

Number of shared co-authors 1

Ruben Abagyan

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 1981

Number of shared co-authors 2

Ruth Nussinov

Sackler School of Medicine, Tel Aviv University

Career Start Year 1980

Number of shared co-authors 5

Philip E Bourne

University of Virginia

Career Start Year 1980

Number of shared co-authors 4

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Career Start Year 1975

Number of shared co-authors 3

George N Phillips

Rice University

Career Start Year 1974

Number of shared co-authors 5

Tom L Blundell

Heartand Lung Research Institute, University of Cambridge

Career Start Year 1971

Number of shared co-authors 1

Joel L Sussman

Weizmann Institute of Science

Career Start Year 1971

Number of shared co-authors 2

Andras Fiser

Albert Einstein College of Medicine

Career Start Year 1968

Number of shared co-authors 10

Wayne A Hendrickson

Columbia University

Career Start Year 1968

Number of shared co-authors 5

Jens Meiler

Vanderbilt University

Career Start Year 1954

Number of shared co-authors 5

row(s) 1 - 30 of 30

Thomas E Ferrin

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 16

Conrad C Huang

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 15

Patricia C Babbitt

University of California san francisco

Co-authored papers 11

John H Morris

University of California san francisco

Co-authored papers 11

Eric F Pettersen

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 8

Henry R Bourne

Co-authored papers 7

Thomas D Goddard

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 5

Shoshana D Brown

University of California san francisco

Co-authored papers 5

Eyal Akiva

University of California san francisco

Co-authored papers 4

Gemma L Holliday

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 4

Andrej Sali (CM4AI)

University of California San Francisco

Co-authored papers 3

Doug Stryke

University of California San Francisco

Co-authored papers 3

Olivier Lichtarge

Baylor College of Medicine

Co-authored papers 3

William C Skarnes

Wellcome Trust Sanger Institute

Co-authored papers 2

Ursula Pieper

University of California san francisco

Co-authored papers 2

Dina Schneidman-Duhovny

The Hebrew University of Jerusalem

Co-authored papers 2

Zheng Yang

and Clinical & Translational Science Institute, University of Pittsburgh

Co-authored papers 2

Alexander R Pico

Institute of Data Science and Biotechnology, Gladstone Institutes

Co-authored papers 2

Benjamin Webb

University of California san francisco

Co-authored papers 2

S??ren P Sheikh

Odense University Hospital

Co-authored papers 2

Susan J Johns

Center for Visualization, Washington State University

Co-authored papers 2

Michiko Kawamoto

Co-authored papers 2

Wolfgang Wurst

Institute of Developmental Genetics, German Research Center for Environmental Health

Co-authored papers 1

Volker D??tsch

Institute for Biophysical Chemistry, Goethe-University

Co-authored papers 1

Kimmen Sj??lander

University of California berkeley

Co-authored papers 1

Bruce R Conklin

Gladstone Institutes

Co-authored papers 1

Michael J Keiser

Institute for Neurodegenerative Diseases, University of California san francisco

Co-authored papers 1

Ruchira S Datta

Center for Evolution and Cancer, University of California San Francisco San Francisco

Co-authored papers 1

Susan T Mashiyama

University of California san francisco

Co-authored papers 1

Ranyee A Chiang

University of California San Francisco

Co-authored papers 1

1 - 30

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