Author details

Full Name

JosÃ© Carbonell-Caballero

Affiliation

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36034422	Global signalling network analysis of luminal T47D breast cancer cells in response to progesterone.	Frontiers in Endocrinology	2022
34850111	A set of accessible enhancers enables the initial response of breast cancer cells to physiological progestin concentrations.	Nucleic Acids Research	2021
33693521	Plastome genomics in South American maize landraces: chloroplast lineages parallel the geographical structuring of nuclear gene pools.	Ann Bot	2021
31373033	C/EBPÎ± mediates the growth inhibitory effect of progestins on breast cancer cells.	EMBO Journal	2019
30552103	Hormone-control regions mediate steroid receptor-dependent genome organization.	Genome Research	2019
29868818	A comparison of mechanistic signaling pathway activity analysis methods.	Brief Bioinform	2019
30472187	Arginine Citrullination at the C-Terminal Domain Controls RNA Polymerase II Transcription.	Mol Cell	2019
31510016	Expression of Oncogenic Drivers in 3D Cell Culture Depends on Nuclear ATP Synthesis by NUDT5.	Cancers	2019
30693469	Fibroblast activation and abnormal extracellular matrix remodelling as common hallmarks in three cancer-prone genodermatoses.	Br J Dermatol	2019
30854222	Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models.	NPJ Syst Biol Appl	2019
29414943	Genomics of the origin and evolution of Citrus.	Nature	2018
30303964	The modular network structure of the mutational landscape of Acute Myeloid Leukemia.	PLoS One	2018
30135189	Gene Expression Integration into Pathway Modules Reveals a Pan-Cancer Metabolic Landscape.	Cancer Res	2018
30134948	Models of cell signaling uncover molecular mechanisms of high-risk neuroblastoma and predict disease outcome.	Biol Direct	2018
29440659	The effects of death and post-mortem cold ischemia on human tissue transcriptomes.	Nat Commun	2018
28042959	High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes.	Oncotarget	2017
28961772	Reference genome assessment from a population scale perspective: an accurate profile of variability and noise.	Bioinformatics	2017
28000771	The pan-cancer pathological regulatory landscape.	Sci Rep	2016
26886259	The Mutational Landscape of Acute Promyelocytic Leukemia Reveals an Interacting Network of Co-Occurrences and Recurrent Mutations.	PLoS One	2016
27137885	Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models.	Nucleic Acids Res	2016
25758634	Involvement of a citrus meiotic recombination TTC-repeat motif in the formation of gross deletions generated by ionizing radiation and MULE activation.	BMC Genomics	2015
25873589	A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrus.	Mol Biol Evol	2015
25897133	Babelomics 5.0: functional interpretation for new generations of genomic data.	Nucleic Acids Res	2015
24530791	Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia.	Fungal Genet Biol	2014
25261458	The role of the interactome in the maintenance of deleterious variability in human populations.	Mol Syst Biol	2014
23748960	Inferring the functional effect of gene expression changes in signaling pathways.	Nucleic Acids Res	2013
22906193	A map of human microRNA variation uncovers unexpectedly high levels of variability.	Genome Med	2012
22914218	Qualimap: evaluating next-generation sequencing alignment data.	Bioinformatics	2012
21646336	Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.	Nucleic Acids Res	2011
20071145	Increased amygdala and parahippocampal gyrus activation in schizophrenic patients with auditory hallucinations: an fMRI study using independent component analysis.	Schizophrenia Research	2010
20525784	Serial Expression Analysis: a web tool for the analysis of serial gene expression data.	Nucleic Acids Res	2010
20478823	Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.	Nucleic Acids Res	2010
19502494	Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies.	Nucleic Acids Res	2009
18508806	GEPAS, a web-based tool for microarray data analysis and interpretation.	Nucleic Acids Res	2008
18381247	MRI denoising using non-local means.	Medical Image Analysis	2008
18383286	Robust MRI brain tissue parameter estimation by multistage outlier rejection.	Magnetic Resonance in Medicine	2008
18515841	Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments.	Nucleic Acids Res	2008
17467325	A nonparametric MRI inhomogeneity correction method.	Medical Image Analysis	2007
16823125	Using the grid to analyze the pharmacokinetic modelling after contrast administration in dynamic MRI.	Studies in Health Technology and Informatics	2006
17115124	Accurate quantification methods to evaluate cervical cord atrophy in multiple sclerosis patients.	Magnetic Resonance Materials in Physics, Biology, and Medicine	2006