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Author Details

Itsik Pe'er
Columbia University
1999
114
43
PMIDPaper TitleJournal TitlePublished Year
37748506A Scoping Review of Preterm Birth Risk Factors.Am J Perinatol2024
37748506A Scoping Review of Preterm Birth Risk Factors.Am J Perinatol2024
36928429Contamination source modeling with SCRuB improves cancer phenotype prediction from microbiome data.Nat Biotechnol2023
37602697Searching and visualizing genetic associations of pregnancy traits by using GnuMoM2b.Genetics2023
36973557SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data.Nat Biotechnol2023
37090627A Comprehensive and Bias-Free Machine Learning Approach for Risk Prediction of Preeclampsia with Severe Features in a Nulliparous Study Cohort.Res Sq2023
37248299Polygenic prediction of preeclampsia and gestational hypertension.Nat Med2023
36928429Contamination source modeling with SCRuB improves cancer phenotype prediction from microbiome data.Nat Biotechnol2023
37228361Scoping review of genetic databases for rare dermatologic diseases: Opportunity for artificial intelligence and machine learning.JAAD Int2023
37602697Searching and visualizing genetic associations of pregnancy traits by using GnuMoM2b.Genetics2023
37090627A Comprehensive and Bias-Free Machine Learning Approach for Risk Prediction of Preeclampsia with Severe Features in a Nulliparous Study Cohort.Res Sq2023
37248299Polygenic prediction of preeclampsia and gestational hypertension.Nat Med2023
36973557SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data.Nat Biotechnol2023
37228361Scoping review of genetic databases for rare dermatologic diseases: Opportunity for artificial intelligence and machine learning.JAAD Int2023
34987055Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reveals personalized growth rates.Genome Res2022
36351201Special Issue: RECOMB 2022, Part 1.J Comput Biol2022
36282896An Approximate Bayesian Computation Approach for Modeling Genome Rearrangements.Mol Biol Evol2022
36699411MiSDEED: a synthetic data engine for microbiome study power analysis and study design.Bioinform Adv2022
36525309Special Issue: RECOMB 2022, Part 2.J Comput Biol2022
34987055Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reveals personalized growth rates.Genome Res2022
36525309Special Issue: RECOMB 2022, Part 2.J Comput Biol2022
36699411MiSDEED: a synthetic data engine for microbiome study power analysis and study design.Bioinform Adv2022
36351201Special Issue: RECOMB 2022, Part 1.J Comput Biol2022
36282896An Approximate Bayesian Computation Approach for Modeling Genome Rearrangements.Mol Biol Evol2022
33003198SICaRiO: short indel call filtering with boosting.Brief Bioinform2021
33606255An Introduction to Whole-Metagenome Shotgun Sequencing Studies.Methods Mol Biol2021
33003198SICaRiO: short indel call filtering with boosting.Brief Bioinform2021
34751587Directional Gaussian Mixture Models of the Gut Microbiome Elucidate Microbial Spatial Structure.mSystems2021
33606255An Introduction to Whole-Metagenome Shotgun Sequencing Studies.Methods Mol Biol2021
34751587Directional Gaussian Mixture Models of the Gut Microbiome Elucidate Microbial Spatial Structure.mSystems2021
31173059arcasHLA: high-resolution HLA typing from RNAseq.Bioinformatics2020
32469867Compositional Lotka-Volterra describes microbial dynamics in the simplex.PLoS Comput Biol2020
32457240Predicting Phenotypic Polymyxin Resistance in Klebsiella pneumoniae through Machine Learning Analysis of Genomic Data.mSystems2020
33095765Correction: Leveraging correlations between variants in polygenic risk scores to detect heterogeneity in GWAS cohorts.PLoS Genet2020
32684275Efficient and Accurate Inference of Mixed Microbial Population Trajectories from Longitudinal Count Data.Cell Syst2020
32956347Leveraging correlations between variants in polygenic risk scores to detect heterogeneity in GWAS cohorts.PLoS Genet2020
31173059arcasHLA: high-resolution HLA typing from RNAseq.Bioinformatics2020
33095765Correction: Leveraging correlations between variants in polygenic risk scores to detect heterogeneity in GWAS cohorts.PLoS Genet2020
32684275Efficient and Accurate Inference of Mixed Microbial Population Trajectories from Longitudinal Count Data.Cell Syst2020
32956347Leveraging correlations between variants in polygenic risk scores to detect heterogeneity in GWAS cohorts.PLoS Genet2020
32469867Compositional Lotka-Volterra describes microbial dynamics in the simplex.PLoS Comput Biol2020
32457240Predicting Phenotypic Polymyxin Resistance in Klebsiella pneumoniae through Machine Learning Analysis of Genomic Data.mSystems2020
30526005Autoencoding Topographic Factors.J Comput Biol2019
30526005Autoencoding Topographic Factors.J Comput Biol2019
31182859FEAST: fast expectation-maximization for microbial source tracking.Nat Methods2019
31256878Inference of Population Structure from Time-Series Genotype Data.Am J Hum Genet2019
31182859FEAST: fast expectation-maximization for microbial source tracking.Nat Methods2019
31256878Inference of Population Structure from Time-Series Genotype Data.Am J Hum Genet2019
29321258Functional variants in the <i>LRRK2</i> gene confer shared effects on risk for Crohn's disease and Parkinson's disease.Sci Transl Med2018
30309907Identity inference of genomic data using long-range familial searches.Science2018
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Collaborators

Mark J Daly
Massachusetts General Hospital
Co-authored papers 18
David Altshuler
Broad Institute of Harvard and Massachusetts Institute of Technology (MIT)
Co-authored papers 15
Todd Lencz
Co-authored papers 15
Alexander Gusev
The Center for Functional Cancer Epigenetics, Dana Farber Cancer Institute
Co-authored papers 12
Gil Atzmon
Co-authored papers 10
Ron Shamir
Tel Aviv University
Co-authored papers 9
Yufeng Shen
Columbia University
Co-authored papers 8
Judy H Cho
Co-authored papers 8
Eimear E Kenny
Icahn School of Medicine at Mount Sinai, NY Institute for Genomic Health
Co-authored papers 8
Jacques S Beckmann
University of Lausanne
Co-authored papers 7
Julian B Maller
Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard
Co-authored papers 7
Paul I W de Bakker
Vertex Pharmaceuticals
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Nir Barzilai
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Peter K Gregersen
Co-authored papers 6
Hakon Hakonarson
The Center for Applied Genomics, Children's Hospital of Philadelphia
Co-authored papers 6
Steven R Brant
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Mark S Silverberg
Co-authored papers 4
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Thomas LaFramboise
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Richa Saxena
Massachusetts General Hospital and Harvard Medical School
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Richard P Lifton
The Rockefeller University
Co-authored papers 4
Alkes L Price
Broad Institute of MIT and Harvard
Co-authored papers 4
Stacey Gabriel
Broad Institute of MIT and Harvard
Co-authored papers 4
Matthew L Freedman
Dana-Farber Cancer Institute
Co-authored papers 4
Annette T Lee
Co-authored papers 3
Brendan Blumenstiel
Broad Institute of MIT and Harvard
Co-authored papers 3
Shaun Purcell
Brigham and Women's Hospital
Co-authored papers 3
Rachel Barry
St. James's Hospital
Co-authored papers 3
Yves Chr??tien
European Hospital Georges Pompidou, University of Paris Descartes
Co-authored papers 3
David B Goldstein
Institute for Genomic Medicine, Columbia University Irving Medical Center
Co-authored papers 3
Release 1.2