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Author Details

Paul A Bates
The Francis Crick Institute
1989
121
57
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36892272Interplay of adherens junctions and matrix proteolysis determines the invasive pattern and growth of squamous cell carcinoma.Elife2023
36892272Interplay of adherens junctions and matrix proteolysis determines the invasive pattern and growth of squamous cell carcinoma.Elife2023
36626764Critical Assessment of Methods for Predicting the 3D Structure of Proteins and Protein Complexes.Annu Rev Biophys2023
36626764Critical Assessment of Methods for Predicting the 3D Structure of Proteins and Protein Complexes.Annu Rev Biophys2023
34949820Spatial patterns of tumour growth impact clonal diversification in a computational model and the TRACERx Renal study.Nat Ecol Evol2022
35449136Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization.Nat Commun2022
35810775Application of deep learning methods: From molecular modelling to patient classification.Exp Cell Res2022
34949820Spatial patterns of tumour growth impact clonal diversification in a computational model and the TRACERx Renal study.Nat Ecol Evol2022
35449136Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization.Nat Commun2022
35810775Application of deep learning methods: From molecular modelling to patient classification.Exp Cell Res2022
33434270Comparison of loop extrusion and diffusion capture as mitotic chromosome formation pathways in fission yeast.Nucleic Acids Res2021
34122144Toward Patient-Specific Prediction of Ablation Strategies for Atrial Fibrillation Using Deep Learning.Front Physiol2021
34002049Selection of metastasis competent subclones in the tumour interior.Nat Ecol Evol2021
33504622A FIJI macro for quantifying pattern in extracellular matrix.Life Sci Alliance2021
33434270Comparison of loop extrusion and diffusion capture as mitotic chromosome formation pathways in fission yeast.Nucleic Acids Res2021
33504622A FIJI macro for quantifying pattern in extracellular matrix.Life Sci Alliance2021
34122144Toward Patient-Specific Prediction of Ablation Strategies for Atrial Fibrillation Using Deep Learning.Front Physiol2021
34002049Selection of metastasis competent subclones in the tumour interior.Nat Ecol Evol2021
32155411Butyrophilin-2A1 Directly Binds Germline-Encoded Regions of the Vγ9Vδ2 TCR and Is Essential for Phosphoantigen Sensing.Immunity2020
31697436Enhanced sampling of protein conformational states for dynamic cross-docking within the protein-protein docking server SwarmDock.Proteins2020
32155411Butyrophilin-2A1 Directly Binds Germline-Encoded Regions of the Vγ9Vδ2 TCR and Is Essential for Phosphoantigen Sensing.Immunity2020
31659294Extracellular matrix anisotropy is determined by TFAP2C-dependent regulation of cell collisions.Nat Mater2020
33153481Fission yeast condensin contributes to interphase chromatin organization and prevents transcription-coupled DNA damage.Genome Biol2020
32621226A Guide for Protein-Protein Docking Using SwarmDock.Methods Mol Biol2020
31697436Enhanced sampling of protein conformational states for dynamic cross-docking within the protein-protein docking server SwarmDock.Proteins2020
31659294Extracellular matrix anisotropy is determined by TFAP2C-dependent regulation of cell collisions.Nat Mater2020
33153481Fission yeast condensin contributes to interphase chromatin organization and prevents transcription-coupled DNA damage.Genome Biol2020
32621226A Guide for Protein-Protein Docking Using SwarmDock.Methods Mol Biol2020
30370948Refinement of protein-protein complexes in contact map space with metadynamics simulations.Proteins2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
31658254Matrix feedback enables diverse higher-order patterning of the extracellular matrix.PLoS Comput Biol2019
30370948Refinement of protein-protein complexes in contact map space with metadynamics simulations.Proteins2019
31658254Matrix feedback enables diverse higher-order patterning of the extracellular matrix.PLoS Comput Biol2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
29605931Flexible Protein-Protein Docking with SwarmDock.Methods Mol Biol2018
30420626The γδTCR combines innate immunity with adaptive immunity by utilizing spatially distinct regions for agonist selection and antigen responsiveness.Nat Immunol2018
30180164Predicting improved protein conformations with a temporal deep recurrent neural network.PLoS One2018
29605931Flexible Protein-Protein Docking with SwarmDock.Methods Mol Biol2018
30180164Predicting improved protein conformations with a temporal deep recurrent neural network.PLoS One2018
30420626The γδTCR combines innate immunity with adaptive immunity by utilizing spatially distinct regions for agonist selection and antigen responsiveness.Nat Immunol2018
27935158A machine learning approach for ranking clusters of docked protein-protein complexes by pairwise cluster comparison.Proteins2017
27935158A machine learning approach for ranking clusters of docked protein-protein complexes by pairwise cluster comparison.Proteins2017
28200016IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.Bioinformatics2017
28200016IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.Bioinformatics2017
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
27397686Ctf4 Links DNA Replication with Sister Chromatid Cohesion Establishment by Recruiting the Chl1 Helicase to the Replisome.Mol Cell2016
27738173Opposing effects of Elk-1 multisite phosphorylation shape its response to ERK activation.Science2016
27738173Opposing effects of Elk-1 multisite phosphorylation shape its response to ERK activation.Science2016
27397686Ctf4 Links DNA Replication with Sister Chromatid Cohesion Establishment by Recruiting the Chl1 Helicase to the Replisome.Mol Cell2016
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Collaborators

Iain H Moal
GSK Medicines Research Centre
Co-authored papers 20
Michael J E Sternberg
Imperial College London
Co-authored papers 17
Raphael A G Chaleil
Francis Crick Institute
Co-authored papers 14
Mieczyslaw Torchala
University of Gdansk
Co-authored papers 12
Juan Fern??ndez-Recio
Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)
Co-authored papers 10
Zhiping Weng
University of Massachusetts Medical School
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Thom Vreven
Visterra Inc.
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Charles Swanton
Francis Crick Institute
Co-authored papers 7
Alexandre M J J Bonvin
Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 7
Panagiotis L Kastritis
Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg
Co-authored papers 6
Brian G Pierce
University of Maryland Institute for Bioscience and Biotechnology Research
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Brian Jim??nez-Garc??a
Utrecht University
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Shoshana J Wodak
VIB-VUB Center for Structural Biology
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Xiaoqin Zou
Dalton Cardiovascular Research Center, University of Missouri
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Dima Kozakov
Stony Brook University
Co-authored papers 5
Sandor Vajda
Boston University
Co-authored papers 5
Rudi Agius
Co-authored papers 5
Chaok Seok
Seoul National University
Co-authored papers 5
Sheng-You Huang
Huazhong University of Science and Technology
Co-authored papers 5
Huan-Xiang Zhou
University of Illinois Chicago
Co-authored papers 5
Tereza Gerguri
Co-authored papers 4
Sergei Grudinin
University Grenoble Alpes, CNRS
Co-authored papers 4
Howook Hwang
Co-authored papers 4
Steven Hazell
Royal Marsden NHS Foundation Trust
Co-authored papers 4
Sanbo Qin
University of Illinois at Chicago
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Marc F Lensink
University Lille, CNRS
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Hasup Lee
Seoul National University
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Jeffrey J Gray
Johns Hopkins University
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Daisuke Kihara
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Release 1.2