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Author Details

Minkyung Baek
Seoul National University
2016
35
16
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37996753Accurate prediction of protein-nucleic acid complexes using RoseTTAFoldNA.Nat Methods2024
37996753Accurate prediction of protein-nucleic acid complexes using RoseTTAFoldNA.Nat Methods2024
36802421Peptide-binding specificity prediction using fine-tuned protein structure prediction networks.Proc Natl Acad Sci U S A2023
37986761Democratizing Protein Language Models with Parameter-Efficient Fine-Tuning.bioRxiv2023
37695922Zero-shot mutation effect prediction on protein stability and function using RoseTTAFold.Protein Sci2023
37149653Improving de novo protein binder design with deep learning.Nat Commun2023
37079676Top-down design of protein architectures with reinforcement learning.Science2023
36807264The Ï¿PA3 phage nucleus is enclosed by a self-assembling 2D crystalline lattice.Nat Commun2023
36802421Peptide-binding specificity prediction using fine-tuned protein structure prediction networks.Proc Natl Acad Sci U S A2023
37433327De novo design of protein structure and function with RFdiffusion.Nature2023
37100290Protein-protein interactions in the Mla lipid transport system probed by computational structure prediction and deep mutational scanning.J Biol Chem2023
37695922Zero-shot mutation effect prediction on protein stability and function using RoseTTAFold.Protein Sci2023
37986761Democratizing Protein Language Models with Parameter-Efficient Fine-Tuning.bioRxiv2023
37149653Improving de novo protein binder design with deep learning.Nat Commun2023
37079676Top-down design of protein architectures with reinforcement learning.Science2023
37100290Protein-protein interactions in the Mla lipid transport system probed by computational structure prediction and deep mutational scanning.J Biol Chem2023
37433327De novo design of protein structure and function with RFdiffusion.Nature2023
36807264The Ï¿PA3 phage nucleus is enclosed by a self-assembling 2D crystalline lattice.Nat Commun2023
35017724Deep learning and protein structure modeling.Nat Methods2022
36108048Hallucinating symmetric protein assemblies.Science2022
35862514Scaffolding protein functional sites using deep learning.Science2022
35017724Deep learning and protein structure modeling.Nat Methods2022
35862514Scaffolding protein functional sites using deep learning.Science2022
36108048Hallucinating symmetric protein assemblies.Science2022
34048578GalaxyHeteromer: protein heterodimer structure prediction by template-based and ab initio docking.Nucleic Acids Res2021
33637700Improved protein structure refinement guided by deep learning based accuracy estimation.Nat Commun2021
33577321Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein-Ligand Docking.J Chem Theory Comput2021
34048578GalaxyHeteromer: protein heterodimer structure prediction by template-based and ab initio docking.Nucleic Acids Res2021
34331359Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14.Proteins2021
34324224Protein oligomer modeling guided by predicted interchain contacts in CASP14.Proteins2021
34452907Structure of the phosphoinositide 3-kinase (PI3K) p110γ-p101 complex reveals molecular mechanism of GPCR activation.Sci Adv2021
34762488Computed structures of core eukaryotic protein complexes.Science2021
33637700Improved protein structure refinement guided by deep learning based accuracy estimation.Nat Commun2021
33577321Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein-Ligand Docking.J Chem Theory Comput2021
34762488Computed structures of core eukaryotic protein complexes.Science2021
34452907Structure of the phosphoinositide 3-kinase (PI3K) p110γ-p101 complex reveals molecular mechanism of GPCR activation.Sci Adv2021
34324224Protein oligomer modeling guided by predicted interchain contacts in CASP14.Proteins2021
34331359Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14.Proteins2021
32621222Modeling Protein Homo-Oligomer Structures with GalaxyHomomer Web Server.Methods Mol Biol2020
31774573Structure prediction of biological assemblies using GALAXY in CAPRI rounds 38-45.Proteins2020
32621222Modeling Protein Homo-Oligomer Structures with GalaxyHomomer Web Server.Methods Mol Biol2020
31774573Structure prediction of biological assemblies using GALAXY in CAPRI rounds 38-45.Proteins2020
30462267Novel Compound Heterozygote Mutation in IL10RA in a Patient With Very Early-Onset Inflammatory Bowel Disease.Inflamm Bowel Dis2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
30462267Novel Compound Heterozygote Mutation in IL10RA in a Patient With Very Early-Onset Inflammatory Bowel Disease.Inflamm Bowel Dis2019
31509276Prediction of protein oligomer structures using GALAXY in CASP13.Proteins2019
31173387GalaxyTongDock: Symmetric and asymmetric ab initio protein-protein docking web server with improved energy parameters.J Comput Chem2019
31436360Assessment of protein model structure accuracy estimation in CASP13: Challenges in the era of deep learning.Proteins2019
31423613GalaxyDock3: Protein-ligand docking that considers the full ligand conformational flexibility.J Comput Chem2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
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Collaborators

Chaok Seok
Seoul National University
Co-authored papers 17
David Baker
University of Washington
Co-authored papers 14
Ivan Anishchenko
University of Washington
Co-authored papers 7
Frank DiMaio
University of Washington
Co-authored papers 7
Taeyong Park
Co-authored papers 7
Lim Heo
Michigan State University
Co-authored papers 5
Hahnbeom Park
Co-authored papers 4
Hasup Lee
Seoul National University
Co-authored papers 4
Shoshana J Wodak
VIB-VUB Center for Structural Biology
Co-authored papers 3
Marc F Lensink
University Lille, CNRS
Co-authored papers 3
Sameer Velankar
European Bioinformatics Institute
Co-authored papers 3
Petras J Kundrotas
The University of Kansas
Co-authored papers 2
Sheng-You Huang
Huazhong University of Science and Technology
Co-authored papers 2
Daisuke Kihara
Purdue University
Co-authored papers 2
Sangwoo Park
Johns Hopkins University School of Medicine
Co-authored papers 2
Brian G Pierce
University of Maryland Institute for Bioscience and Biotechnology Research
Co-authored papers 2
Woong-Hee Shin
Co-authored papers 2
Adrien S J Melquiond
Oncode Institute & Hubrecht Institute-KNAW and University Medical Center Utrecht
Co-authored papers 2
Thom Vreven
Visterra Inc.
Co-authored papers 2
Xiaoqin Zou
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 2
Li C Xue
Utrecht University
Co-authored papers 2
Bernard Maigret
Universite de Lorraine, CNRS
Co-authored papers 2
Ilya A Vakser
The University of Kansas
Co-authored papers 2
Brian Jim??nez-Garc??a
Utrecht University
Co-authored papers 2
Liming Qiu
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 2
Iain H Moal
GSK Medicines Research Centre
Co-authored papers 2
Dmitri Beglov
Boston University
Co-authored papers 2
Zhiwei Ma
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 2
Tyler Borrman
University of Massachusetts Medical School
Co-authored papers 2
Zhiping Weng
University of Massachusetts Medical School
Co-authored papers 2
Release 1.2