Author details

Full Name

Franz-Josef MÃ¼ller

Affiliation

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37624932	Classification of Brain Tumors by Nanopore Sequencing of Cell-Free DNA from Cerebrospinal Fluid.	Clin Chem	2024
37024684	Dynamic antagonism between key repressive pathways maintains the placental epigenome.	Nat Cell Biol	2023
37343429	Generation of an induced pluripotent stem cell line, ZIPi021-A, from fibroblasts of a Prader-Willi syndrome patient with maternal uniparental disomy (mUPD).		2023
35697781	Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells.	Nature Cell Biology	2022
32564278	An automated and high-throughput-screening compatible pluripotent stem cell-based test platform for developmental and reproductive toxicity assessment of small molecule compounds.	Cell Biology and Toxicology	2021
34140676	Dnmt1 has de novo activity targeted to transposable elements.	Nature Structural and Molecular Biology	2021
32514123	TETs compete with DNMT3 activity in pluripotent cells at thousands of methylated somatic enhancers.	Nat Genet	2020
31339593	In Vitro Recapitulation of Developmental Transitions in Human Neural Stem Cells.	Stem Cells	2019
31740840	Analysis of short tandem repeat expansions and their methylation state with nanopore sequencing.	Nature Biotechnology	2019
30339187	Sensory neuropathy-causing mutations in ATL3 affect ER-mitochondria contact sites and impair axonal mitochondrial distribution.	Human Molecular Genetics	2019
31444389	Automated real-time monitoring of human pluripotent stem cell aggregation in stirred tank reactors.	Sci Rep	2019
31386105	Nanopype: a modular and scalable nanopore data processing pipeline.		2019
29576218	Mutations in PMPCB Encoding the Catalytic Subunit of the Mitochondrial Presequence Protease Cause Neurodegeneration in Early Childhood.	Am J Hum Genet	2018
30296670	Generation of an iPSC line of a patient with Angelman syndrome due to an imprinting defect.	Stem Cell Research	2018
30343101	Generation of two human isogenic iPSC lines from fetal dermal fibroblasts.	Stem Cell Research	2018
29768202	Sensory-Neuropathy-Causing Mutations in ATL3 Cause Aberrant ER Membrane Tethering.	Cell Reports	2018
29216191	Transcription factors, coregulators, and epigenetic marks are linearly correlated and highly redundant.	PLoS One	2017
28957659	Stem Cell Differentiation as a Non-Markov Stochastic Process.	Cell Syst	2017
28602613	CryoPause: A New Method to Immediately Initiate Experiments after Cryopreservation of Pluripotent Stem Cells.	Stem Cell Reports	2017
28346436	Detailed comparison of retroviral vectors and promoter configurations for stable and high transgene expression in human induced pluripotent stem cells.	Gene Ther	2017
28380362	An Organoid-Based Model of Cortical Development Identifies Non-Cell-Autonomous Defects in Wnt Signaling Contributing to Miller-Dieker Syndrome.	Cell Reports	2017
28410642	iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types.	Stem Cell Reports	2017
27254731	Principal components analysis and the reported low intrinsic dimensionality of gene expression microarray data.	Sci Rep	2016
26024287	Investigation of potential traces of pluripotency in germinal-center-derived B-cell lymphomas driven by MYC.	Blood Cancer J	2015
25843048	Emergence of a stage-dependent human liver disease signature with directed differentiation of alpha-1 antitrypsin-deficient iPS cells.	Stem Cell Reports	2015
25546831	Stem cell reprogramming: basic implications and future perspective for movement disorders.	Movement Disorders	2015
25254472	Network biology: A compass for stem-cell differentiation.	Nature	2014
25022790	Neural stem cells genetically-modified to express neprilysin reduce pathology in Alzheimer transgenic models.	Stem Cell Res Ther	2014
25102011	Improved retroviral episome transfer of transcription factors enables sustained cell fate modification.	Gene Ther	2014
24735443	A phenotypic screening approach to identify anticancer compounds derived from marine fungi.	Assay and Drug Development Technologies	2014
23732879	Abnormal neuronal differentiation and mitochondrial dysfunction in hair follicle-derived induced pluripotent stem cells of schizophrenia patients.	Molecular Psychiatry	2013
24147039	PhysioSpace: relating gene expression experiments from heterogeneous sources using shared physiological processes.	PLoS One	2013
23355677	Impaired epithelial differentiation of induced pluripotent stem cells from ectodermal dysplasia-related patients is rescued by the small compound APR-246/PRIMA-1MET.	Proceedings of the National Academy of Sciences of the United States of America	2013
23300961	Power-laws and the use of pluripotent stem cell lines.	PLoS One	2013
23076646	Incidence and outcome of atlanto-occipital dissociation at a level 1 trauma centre: a prospective study of five cases within 5 years.	European Spine Journal	2013
23611953	Reconsidering pluripotency tests: do we still need teratoma assays?	Stem Cell Res	2013
22099027	Induced pluripotent stem cells from hair follicles as a cellular model for neurodevelopmental disorders.	Stem Cell Research	2012
22484851	Small molecules enable highly efficient neuronal conversion of human fibroblasts.	Nat Methods	2012
22560082	Recurrent variations in DNA methylation in human pluripotent stem cells and their differentiated derivatives.		2012
22710010	Cotrel-dubousset instrumentation for the correction of adolescent idiopathic scoliosis. Long-term results with an unexpected high revision rate.	Scoliosis	2012
23054961	Scope and impact of international research in human pluripotent stem cells.	Stem Cell Reviews and Reports	2012
23103910	Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity.	Nat Cell Biol	2012
21833573	Occipital condyle fractures. Prospective follow-up of 31 cases within 5 years at a level 1 trauma centre.	European Spine Journal	2012
21901750	A guide to stem cell identification: progress and challenges in system-wide predictive testing with complex biomarkers.	BioEssays	2011
21211785	Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture.	Cell Stem Cell	2011
21477362	Post-traumatic fulminant paradoxical fat embolism syndrome in conjunction with asymptomatic atrial septal defect: a case report and review of the literature.	Journal of Medical Case Reports	2011
21378979	A bioinformatic assay for pluripotency in human cells.	Nature Methods	2011
22012402	Few inputs can reprogram biological networks.	Nature	2011
21822882	Basic approaches to gene expression analysis of stem cells by microarrays.	Methods in Molecular Biology	2011
20538952	Focal lesions of human hippocampal CA1 neurons in transient global amnesia impair place memory.	Science	2010