Author details

Full Name

Magali Michaut

Affiliation

The Netherlands Cancer Institute

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35086954	Functional Genomic Identification of Predictors of Sensitivity and Mechanisms of Resistance to Multivalent Second-Generation TRAIL-R2 Agonists.	Mol Cancer Ther	2022
35545054	PTBP1 promotes hematopoietic stem cell maintenance and red blood cell development by ensuring sufficient availability of ribosomal constituents.	Cell Rep	2022
35452596	Long-term feeder-free culture of human pancreatic progenitors on fibronectin or matrix-free polymer potentiates Î² cell differentiation.	Stem Cell Reports	2022
30657888	Principal component analysis of binary genomics data.	Brief Bioinform	2019
31775043	ERG Controls B Cell Development by Promoting Igh V-to-DJ Recombination.	Cell Rep	2019
29345617	Loss of functional BAP1 augments sensitivity to TRAIL in cancer cells.	Elife	2018
30524905	Assessment of PD-L1 expression across breast cancer molecular subtypes, in relation to mutation rate, <i>BRCA1</i>-like status, tumor-infiltrating immune cells and survival.	Oncoimmunology	2018
30423084	iTOP: inferring the topology of omics data.	Bioinformatics	2018
29346365	The ISCB Student Council Internship Program: Expanding computational biology capacity worldwide.	PLoS Comput Biol	2018
28851423	The BRCA1ness signature is associated significantly with response to PARP inhibitor treatment versus control in the I-SPY 2 randomized neoadjuvant setting.	Breast Cancer Res	2017
28854368	Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells.	Cell Rep	2017
25636205	ERBB2 Mutations Characterize a Subgroup of Muscle-invasive Bladder Cancers with Excellent Response to Neoadjuvant Chemotherapy.	Eur Urol	2016
27587657	TANDEM: a two-stage approach to maximize interpretability of drug response models based on multiple molecular data types.	Bioinformatics	2016
27321817	OncoScape: Exploring the cancer aberration landscape by genomic data fusion.	Sci Rep	2016
26729235	Integration of genomic, transcriptomic and proteomic data identifies two biologically distinct subtypes of invasive lobular breast cancer.	Sci Rep	2016
25654371	A quick guide for building a successful bioinformatics community.	PLoS Comput Biol	2015
26433948	Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response.	Breast Cancer Res	2015
26004083	BRCA1-like signature in triple negative breast cancer: Molecular and clinical characterization reveals subgroups with therapeutic potential.	Mol Oncol	2015
24499938	Building the future of bioinformatics through student-facilitated conferencing.	PLoS Comput Biol	2014
25456132	Parallel in vivo and in vitro melanoma RNAi dropout screens reveal synthetic lethality between hypoxia and DNA damage response inhibition.	Cell Rep	2014
24874540	Learn from the best.	PLoS Comput Biol	2014
24675824	Crossing borders for science.	PLoS Comput Biol	2014
23633940	Distinct types of disorder in the human proteome: functional implications for alternative splicing.	PLoS Comput Biol	2013
24278001	Ten simple rules for starting a regional student group.	PLoS Comput Biol	2013
24098107	The regional student group program of the ISCB student council: stories from the road.	PLoS Comput Biol	2013
24244148	The young PI buzz: learning from the organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013.	PLoS Comput Biol	2013
24204239	Explain bioinformatics to your grandmother!	PLoS Comput Biol	2013
22101230	An omics perspective of protein disorder.	Mol Biosyst	2012
22737063	Multiple genetic interaction experiments provide complementary information useful for gene function prediction.	PLoS Comput Biol	2012
22926706	A robust genomic signature for the detection of colorectal cancer patients with microsatellite instability phenotype and high mutation frequency.	J Pathol	2012
22438817	Mapping the Hsp90 genetic interaction network in Candida albicans reveals environmental contingency and rewired circuitry.	PLoS Genet	2012
21390331	Protein complexes are central in the yeast genetic landscape.	PLoS Comput Biol	2011
22028670	A systems biology approach reveals the role of a novel methyltransferase in response to chemical stress and lipid homeostasis.	PLoS Genet	2011
22046114	Ten simple rules for getting involved in your scientific community.	PLoS Comput Biol	2011
22125496	Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways.	PLoS Genet	2011
21716279	PSICQUIC and PSISCORE: accessing and scoring molecular interactions.	Nat Methods	2011
21715556	Putting genetic interactions in context through a global modular decomposition.	Genome Res	2011
21324131	Bringing order to protein disorder through comparative genomics and genetic interactions.	Genome Biol	2011
19850723	The IntAct molecular interaction database in 2010.	Nucleic Acids Res	2010
19706510	Genome-wide location analysis reveals a role for Sub1 in RNA polymerase III transcription.	Proc Natl Acad Sci U S A	2009
18352172	Search for flavor-changing-neutral-current d meson decays.	Phys Rev Lett	2008
18508856	InteroPORC: automated inference of highly conserved protein interaction networks.	Bioinformatics	2008
18628399	Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription.	Genes Dev	2008
17501111	Lifetime difference and CP-violating phase in the Bs0 system.	Phys Rev Lett	2007
18233437	Study of the decay Bs(0)-->Ds()Ds().	Phys Rev Lett	2007
18233063	Search for production of single top quarks via tcg and tug flavor-changing-neutral-current couplings.	Phys Rev Lett	2007
17910763	Cadmium triggers an integrated reprogramming of the metabolism of Synechocystis PCC6803, under the control of the Slr1738 regulator.	BMC Genomics	2007
17995396	Measurement of the Lambdab0 lifetime using semileptonic decays.	Phys Rev Lett	2007
17995320	Properties of L=1 B(1) and B(2)* mesons.	Phys Rev Lett	2007
17930814	Search for third-generation scalar leptoquarks in pp at square root s=1.96 TeV.	Phys Rev Lett	2007

1 - 50 of 76

Eric Paquet

University of Laval

Career Start Year 2007

Number of shared co-authors 0

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 3

Semin Lee

Ulsan National Institute of Science and Technology (UNIST)

Career Start Year 2005

Number of shared co-authors 0

Tommaso Mazza

Fondazione IRCCS Casa Sollievo della Sofferenza,71013

Career Start Year 2005

Number of shared co-authors 1

Osvaldo Gra??a

Spanish National Cancer Research Centre-CNIO

Career Start Year 2002

Number of shared co-authors 1

Thomas Wilhelm

Institute of Biochemistry and Molecular Immunology, RWTH Aachen University

Career Start Year 2000

Number of shared co-authors 0

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 15

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 6

Frederick P Roth

University of Toronto

Career Start Year 1998

Number of shared co-authors 12

J Lynn Fink

The University of Queensland Diamantina Institute, The University of Queensland

Career Start Year 1997

Number of shared co-authors 4

Georg Fuellen

Rostock University Medical Center

Career Start Year 1996

Number of shared co-authors 0

Trey Ideker (CM4AI)

University of California San Diego

Career Start Year 1996

Number of shared co-authors 21

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 1

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 21

Bonnie Berger

Massachusetts Institute of Technology

Career Start Year 1994

Number of shared co-authors 4

Edward M Marcotte

University of Texas

Career Start Year 1993

Number of shared co-authors 12

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 13

Bianca Habermann

Aix Marseille University, CNRS, Turing Center for Living Systems

Career Start Year 1993

Number of shared co-authors 6

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 5

Andreas Beyer

University of Cologne

Career Start Year 1991

Number of shared co-authors 5

Emmanuel Barillot

Institut Curie, Universite PSL

Career Start Year 1991

Number of shared co-authors 4

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 22

Vesteinn Thorsson

Institute for Systems Biology

Career Start Year 1990

Number of shared co-authors 3

Gustavo Stolovitzky

IBM T.J. Watson Research Center

Career Start Year 1990

Number of shared co-authors 7

S??ren Brunak

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1988

Number of shared co-authors 13

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 11

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Career Start Year 1986

Number of shared co-authors 26

Nir Yosef

Center for Computational Biology, University of California berkeley

Career Start Year 1986

Number of shared co-authors 1

Philip E Bourne

University of Virginia

Career Start Year 1980

Number of shared co-authors 5

Yves Moreau

KU Leuven - University of Leuven

Career Start Year 1967

Number of shared co-authors 5

row(s) 1 - 30 of 30

Terrence Toole

Co-authored papers 33

Christian Schmitt

Universite de Strasbourg, CNRS

Co-authored papers 32

Lodewyk F A Wessels

University Medical Centre Mannheim, University of Heidelberg

Co-authored papers 13

Daniel Lam

Co-authored papers 13

Chad L Myers

University of Minnesota - Twin Cities

Co-authored papers 5

Gary D Bader

University of Toronto

Co-authored papers 5

Ultan McDermott

Wellcome Sanger Institute

Co-authored papers 4

Tesa M Severson

Oncode Institute, The Netherlands Cancer Institute

Co-authored papers 4

Carlos Caldas

Cancer Research UK Cambridge Institute, University of Cambridge

Co-authored papers 3

Henning Hermjakob

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 3

Geoff Macintyre

CRUK Cambridge Institute, University of Cambridge

Co-authored papers 3

Michael Costanzo

Co-authored papers 3

Brenda J Andrews

University of Toronto

Co-authored papers 3

Charles Boone

University of Toronto

Co-authored papers 3

Samuel Kerrien

Ecole polytechnique federale de Lausanne (EPFL)

Co-authored papers 3

Mathew J Garnett

Wellcome Sanger Institute

Co-authored papers 2

Karin Jirstr??m

Lund University

Co-authored papers 2

Jules Kerssemakers

German Cancer Research Center (DKFZ)

Co-authored papers 2

Jyoti Khadake

Cambridge University and Cambridge University Hospitals NHS Foundation Trust

Co-authored papers 2

Sandra Orchard

EMBL's European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 2

Bruno Aranda

European Bioinformatics Institute

Co-authored papers 2

Manuel Corpas

Co-authored papers 2

Nicolas Rapin

Rigshospitalet, University of Copenhagen

Co-authored papers 2

Pierre Legrain

Co-authored papers 2

Leah E Cowen

University of Toronto

Co-authored papers 2

Christina Yau

University of California San Francisco

Co-authored papers 1

Nicola Mulder

University of Cape Town

Co-authored papers 1

Alan Bridge

carnegie mellon university

Co-authored papers 1

Ashkan Golshani

Ottawa Institute of Systems Biology, Carleton University

Co-authored papers 1

Fouad Yousif

Ontario Institute for Cancer Research

Co-authored papers 1

1 - 30

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