Author details

Full Name

David L Gibbs

Affiliation

Institute for Systems Biology

ORCID

Career Start Year

2013

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37196797	Apposition of Fibroblasts With Metaplastic Gastric Cells Promotes Dysplastic Transition.	Gastroenterology	2023
37886712	Single-cell gene set scoring with nearest neighbor graph smoothed data (gssnng).	Bioinform Adv	2023
37333362	Concerted epithelial and stromal changes during progression of Barrett's Esophagus to invasive adenocarcinoma exposed by multi-scale, multi-omics analysis.	bioRxiv	2023
35045296	A functional module states framework reveals transcriptional states for drug and target prediction.	Cell Rep	2022
34095775	PRoBE the cloud toolkit: finding the best biomarkers of drug response within a breast cancer clinical trial.	JAMIA Open	2021
34512714	Patient-Specific Cell Communication Networks Associate With Disease Progression in Cancer.	Front Genet	2021
32391377	Intrinsic Genetic and Transcriptomic Patterns Reflect Tumor Immune Subtypes Facilitating Exploring Possible Combinatory Therapy.	Front Mol Biosci	2020
33214875	CRI iAtlas: an interactive portal for immuno-oncology research.	F1000Res	2020
32696951	A generalizable data-driven multicellular model of pancreatic ductal adenocarcinoma.	Gigascience	2020
30833390	Genomic and molecular characterization of preterm birth.	Proc Natl Acad Sci U S A	2019
31743345	ADAPTS: Automated deconvolution augmentation of profiles for tissue specific cells.	PLoS One	2019
31433971	The Immune Landscape of Cancer.	Immunity	2019
31618839	A Pan-Cancer Approach to Predict Responsiveness to Immune Checkpoint Inhibitors by Machine Learning.	Cancers (Basel)	2019
29625049	Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics.	Cell	2018
33266678	Flexibility of Boolean Network Reservoir Computers in Approximating Arbitrary Recursive and Non-Recursive Binary Filters.	Entropy (Basel)	2018
28628618	Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle.	PLoS Comput Biol	2017
29092928	The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research.	Cancer Res	2017
27047537	Using Incomplete Trios to Boost Confidence in Family Based Association Studies.	Front Genet	2016
27587659	Combining dependent P-values with an empirical adaptation of Brown's method.	Bioinformatics	2016
24432028	Multi-omic network signatures of disease.	Front Genet	2014
23096700	Copy number variation analysis in 98 individuals with PHACE syndrome.	J Invest Dermatol	2013
23724967	Protein co-expression network analysis (ProCoNA).	J Clin Bioinforma	2013

1 - 22 of 22

Mehmet Eren Ahsen

Gies College of Business, University of Illinois at Urbana-Champaign.

Career Start Year 2015

Number of shared co-authors 5

Elana J Fertig

Johns Hopkins University School of Medicine

Career Start Year 2010

Number of shared co-authors 4

Matan Hofree

Broad Institute of Harvard and MIT

Career Start Year 2010

Number of shared co-authors 1

Kahn Rhrissorrakrai

T.J. Watson Research Center

Career Start Year 2008

Number of shared co-authors 3

Christopher K Wong

University of California

Career Start Year 2008

Number of shared co-authors 22

Sara J C Gosline

Pacific Northwest National Laboratory (PNNL)

Career Start Year 2006

Number of shared co-authors 2

Matti Nykter

Prostate Cancer Research Center, Tampere University and Tays Cancer Center

Career Start Year 2006

Number of shared co-authors 12

James C Costello

University of Colorado Anschutz Medical Campus

Career Start Year 2006

Number of shared co-authors 3

Chao Cheng

Baylor College of Medicine

Career Start Year 2005

Number of shared co-authors 1

Han-Yu Chuang

Departments of Bioinformatics and Clinical Genomics, Illumina Inc.

Career Start Year 2005

Number of shared co-authors 1

Richard A Moffitt

Stony Brook University, and Stony Brook Cancer Center

Career Start Year 2005

Number of shared co-authors 11

Avi Ma'ayan

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 3

Adam A Margolin

Icahn School of Medicine

Career Start Year 2004

Number of shared co-authors 16

Xianghong Jasmine Zhou

David Geffen School of Medicine, University of California at Los Angeles

Career Start Year 2004

Number of shared co-authors 1

Julio Saez-Rodriguez

Institute of Computational Biomedicine, Heidelberg University

Career Start Year 2004

Number of shared co-authors 8

Benjamin Haibe-Kains

Princess Margaret Cancer Centre, University Health Network

Career Start Year 2004

Number of shared co-authors 7

Ted Laderas

Oregon Health & Science University

Career Start Year 2003

Number of shared co-authors 3

Florian Markowetz

CRUK Cambridge Institute, University of Cambridge

Career Start Year 2003

Number of shared co-authors 0

Olivier Elemento

Meyer Cancer Center

Career Start Year 2002

Number of shared co-authors 10

Yidong Chen

The University of Texas Health Science Center at San Antonio

Career Start Year 2001

Number of shared co-authors 1

Jean Yee Hwa Yang

The University of Sydney

Career Start Year 2001

Number of shared co-authors 0

Mikhail G Dozmorov

Virginia Commonwealth University

Career Start Year 2001

Number of shared co-authors 1

Dana Pe'er

Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center

Career Start Year 2000

Number of shared co-authors 4

Lodewyk F A Wessels

University Medical Centre Mannheim, University of Heidelberg

Career Start Year 2000

Number of shared co-authors 9

Mariano J Alvarez

Vagelos College of Physicians and Surgeons, Columbia University Irving Medical Center

Career Start Year 2000

Number of shared co-authors 3

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 9

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 1

Luigi Marchionni

Weill-Cornell School of Medicine

Career Start Year 1989

Number of shared co-authors 2

Pablo Tamayo

University of California San Diego

Career Start Year 1988

Number of shared co-authors 8

Yuval Kluger

Yale University School of Medicine

Career Start Year 1984

Number of shared co-authors 2

row(s) 1 - 30 of 30

Ilya Shmulevich

Institute for Systems Biology

Co-authored papers 12

Vesteinn Thorsson

Institute for Systems Biology

Co-authored papers 4

Varsha Dhankani

Institute for Systems Biology

Co-authored papers 4

Theo A Knijnenburg

Allen Institute for Cell Science

Co-authored papers 4

Brady Bernard

Co-authored papers 3

Benjamin G Vincent

UNC School of Medicine, The University of North Carolina at Chapel Hill

Co-authored papers 3

Shannon K McWeeney

Oregon Health & Science University, University of California Berkeley

Co-authored papers 3

Alexander J Lazar

The University of Texas MD Anderson Cancer Center

Co-authored papers 2

Andrew D Cherniack

Dana-Farber Cancer Institute

Co-authored papers 2

Antonio Colaprico

Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine

Co-authored papers 2

Justin Guinney

University of Washington

Co-authored papers 2

Ralph S Baric

University of North Carolina

Co-authored papers 2

Eduard Porta-Pardo

Josep Carreras Leukaemia Research Institute

Co-authored papers 2

Kalle Leinonen

Co-authored papers 2

Sheila M Reynolds

Institute for Systems Biology

Co-authored papers 2

Andrew Lamb

Brigham and Women's Hospital, Harvard Medical School

Co-authored papers 2

Guangrong Qin

Institute for Systems Biology

Co-authored papers 2

James A Eddy

Benaroya Research Institute at Virginia Mason, Institute for Systems Biology, Sage Bionetworks, University of Illinois at Urbana-Champaign

Co-authored papers 2

Denise M Wolf

University of California San Francisco

Co-authored papers 2

Nicole Deflaux

Co-authored papers 1

Gordon B Mills

Knight Cancer Institute, Oregon Health and Sciences University

Co-authored papers 1

Gustavo Glusman

Institute for Systems Biology

Co-authored papers 1

Kristen K Dang

Benaroya Research Institute at Virginia Mason

Co-authored papers 1

Arvind Rao

University of Michigan-Ann Arbor

Co-authored papers 1

Denis Bertrand

Co-authored papers 1

Susan Bullman

Fred Hutchinson Cancer Center

Co-authored papers 1

Deborah Collyar

Clinical Trials Information Project

Co-authored papers 1

Benjamin D Solomon

Co-authored papers 1

Greg Eley

Co-authored papers 1

Jaegil Kim

Co-authored papers 1

1 - 30

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