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Author Details

Ivan Erill
University of Maryland
2002
74
21
PMIDPaper TitleJournal TitlePublished Year
36830192Systematic In Silico Assessment of Antimicrobial Resistance Dissemination across the Global Plasmidome.Antibiotics (Basel)2023
37907733Simultaneous entry as an adaptation to virulence in a novel satellite-helper system infecting Streptomyces species.ISME J2023
37842006Impact of mutagenesis and lateral gene transfer processes in bacterial susceptibility to phage in food biocontrol and phage therapy.Front Cell Infect Microbiol2023
37216386The Rvv two-component regulatory system regulates biofilm formation and colonization in Vibrio cholerae.PLoS Pathog2023
37110435Linking Copper-Associated Signal Transduction Systems with Their Environment in Marine Bacteria.Microorganisms2023
36851489Evidence of a Set of Core-Function Genes in 16 Bacillus Podoviral Genomes with Considerable Genomic Diversity.Viruses2023
34986598ECO: the Evidence and Conclusion Ontology, an update for 2022.Nucleic Acids Res2022
36338085Editorial: Microbiome and microbial informatics.Front Microbiol2022
36060776The transcriptional regulator CtrA controls gene expression in Alphaproteobacteria phages: Evidence for a lytic deferment pathway.Front Microbiol2022
36326493Genome Sequences of <i>Streptomyces</i> Bacteriophages Fabian, FlowerPower, Geostin, RetrieverFever, and Vorvolakos.Microbiol Resour Announc2022
36286992Complete Genome Sequences of <i>Streptomyces</i> Bacteriophages Annihilus, TonyStarch, Thiqqums, CricKo, ClubPenguin, RosaAsantewaa, and PherryCruz.Microbiol Resour Announc2022
34327299ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts.Front Res Metr Anal2021
33705385Transcriptional rewiring of the GcrA/CcrM bacterial epigenetic regulatory system in closely related bacteria.PLoS Genet2021
34710081Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).PLoS Comput Biol2021
34614190Non-canonical LexA proteins regulate the SOS response in the Bacteroidetes.Nucleic Acids Res2021
34582496Enhanced copper-resistance gene repertoire in Alteromonas macleodii strains isolated from copper-treated marine coatings.PLoS One2021
32652120Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases.Genomics Proteomics Bioinformatics2020
33327941Flexible comparative genomics of prokaryotic transcriptional regulatory networks.BMC Genomics2020
33071821Conceptualization of the Holobiont Paradigm as It Pertains to Corals.Front Physiol2020
32969787Exploration into the origins and mobilization of di-hydrofolate reductase genes and the emergence of clinical resistance to trimethoprim.Microb Genom2020
32855246Complete Genome Sequence of the <i>Streptomyces</i>-Specific Bacteriophage BRock.Microbiol Resour Announc2020
30407590ECO, the Evidence &amp; Conclusion Ontology: community standard for evidence information.Nucleic Acids Res2019
31817897A Novel Genus of Actinobacterial Tectiviridae.Viruses2019
30687297Origin of the Mobile Di-Hydro-Pteroate Synthase Gene Determining Sulfonamide Resistance in Clinical Isolates.Front Microbiol2019
29348349Complete Genome Sequence of <i>Streptomyces</i> Bacteriophage Abt2graduatex2.Genome Announc2018
29930035Complete Genome Sequences of HonestAbe, Anthony, and Taffo16, Three Cluster C Bacillus cereus Group Bacteriophages.Genome Announc2018
30533665Complete Genome Sequences of Six BI Cluster <i>Streptomyces</i> Bacteriophages, HotFries, Moozy, Rainydai, RavenPuff, Scap1, and SenditCS.Microbiol Resour Announc2018
28618189Comparative genomics of the DNA damage-inducible network in the Patescibacteria.Environ Microbiol2017
28450872Comparative Analysis of <i>Ralstonia solanacearum</i> Methylomes.Front Plant Sci2017
28729280Complete Genome Sequences of Three phi29-Like <i>Bacillus cereus</i> Group <i>Podoviridae</i>.Genome Announc2017
28774974<i>Bacillus cereus</i> Group Bacteriophage Flapjack Genome Sequence.Genome Announc2017
26773385Genomic characterization and comparison of seven Myoviridae bacteriophage infecting Bacillus thuringiensis.Virology2016
27795236Complete Genome Sequence of the Streptomyces Phage Nanodon.Genome Announc2016
27586594Assessment of transfer methods for comparative genomics of regulatory networks in bacteria.BMC Bioinformatics2016
27688335Genome Sequence of Bacillus cereus Group Phage SalinJah.Genome Announc2016
27716039Parametric bootstrapping for biological sequence motifs.BMC Bioinformatics2016
27114493From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF.Database (Oxford)2016
27489856The Verrucomicrobia LexA-Binding Motif: Insights into the Evolutionary Dynamics of the SOS Response.Front Mol Biosci2016
27398089A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data.Algorithms Mol Biol2016
25622616Identification and characterization of VpsR and VpsT binding sites in Vibrio cholerae.J Bacteriol2015
26586903Erratum for Erill and Caruso, Complete Genome Sequence of Bacillus cereus Group Phage TsarBomba.Genome Announc2015
26472840Genome Sequences of Two Bacillus cereus Group Bacteriophages, Eyuki and AvesoBmore.Genome Announc2015
26472830Complete Genome Sequence of Bacillus cereus Group Phage TsarBomba.Genome Announc2015
26227479Diagnostic yield of targeted next generation sequencing in various cancer types: an information-theoretic approach.Cancer Genet2015
26013488Every Site Counts: Submitting Transcription Factor-Binding Site Information through the CollecTF Portal.J Bacteriol2015
25986903An SOS Regulon under Control of a Noncanonical LexA-Binding Motif in the Betaproteobacteria.J Bacteriol2015
24234444CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria.Nucleic Acids Res2014
24689750Informational requirements for transcriptional regulation.J Comput Biol2014
24272778Genome-scale analyses of Escherichia coli and Salmonella enterica AraC reveal noncanonical targets and an expanded core regulon.J Bacteriol2014
24407225Characterization of the SOS meta-regulon in the human gut microbiome.Bioinformatics2014
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Collaborators

University of Maryland Baltimore County
Co-authored papers 4
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 3
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 3
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 3
Center for Biological Data Science, Virginia Commonwealth University
Co-authored papers 2
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 2
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 2
Texas A&M University and Texas Agrilife Research, College Station
Co-authored papers 2
Co-authored papers 2
Texas A&M University, College Station
Co-authored papers 2
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 1
University of Arizona
Co-authored papers 1
University of Lausanne
Co-authored papers 1
Lawrence Berkeley National Laboratory
Co-authored papers 1
Co-authored papers 1
Texas A&M University, College Station
Co-authored papers 1
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 1
Texas A&M University, College Station
Co-authored papers 1
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 1
Institute of Chemistry, University of Sao Paulo
Co-authored papers 1
Broad Institute of MIT and Harvard
Co-authored papers 1
Iowa State University
Co-authored papers 1
Co-authored papers 1
European Bioinformatics Institute
Co-authored papers 1
National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre
Co-authored papers 1
Carnegie Institution for Science
Co-authored papers 1
St Jude Children's Research Hospital
Co-authored papers 1
University of Massachusetts Chan Medical School
Co-authored papers 1
Johns Hopkins University
Co-authored papers 1