Author details

Full Name

Michael Q Zhang

Affiliation

ORCID

Career Start Year

1993

Papers

218

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37165848	Aging-induced pseudouridine synthase 10 impairs hematopoietic stem cells.	Haematologica	2023
36900401	Development and Experimental Validation of a Novel Prognostic Signature for Gastric Cancer.		2023
36797409	SODB facilitates comprehensive exploration of spatial omics data.		2023
35017543	MyoD is a 3D genome structure organizer for muscle cell identity.	Nature Communications	2022
35385732	CTCF functions as an insulator for somatic genes and a chromatin remodeler for pluripotency genes during reprogramming.	Cell Reports	2022
36273819	DAZL regulates proliferation of human primordial germ cells by direct binding to precursor miRNAs and enhances DICER processing activity.	Nucleic Acids Research	2022
36443314	SOTIP is a versatile method for microenvironment modeling with spatial omics data.	Nature Communications	2022
35332300	Avian influenza viruses suppress innate immunity by inducing trans-transcriptional readthrough via SSU72.	Cell Mol Immunol	2022
34850092	Integration of single cell data by disentangled representation learning.	Nucleic Acids Research	2022
34433047	Characterizing microRNA-mediated modulation of gene expression noise and its effect on synthetic gene circuits.	Cell Reports	2021
33674273	Integrative Genomic Analysis of Gemcitabine Resistance in Pancreatic Cancer by Patient-derived Xenograft Models.	Clinical Cancer Research	2021
34140506	3D genome alterations associated with dysregulated HOXA13 expression in high-risk T-lineage acute lymphoblastic leukemia.	Nature Communications	2021
34140314	The loss of heterochromatin is associated with multiscale three-dimensional genome reorganization and aberrant transcription during cellular senescence.	Genome Research	2021
34723439	ScaffComb: A Phenotype-Based Framework for Drug Combination Virtual Screening in Large-Scale Chemical Datasets.	Advanced Science	2021
32323795	Singleâ¿¿cell RNA sequencing of t(8;21) acute myeloid leukemia for risk prediction.	Oncology Reports	2020
31053705	Integrating Hi-C and FISH data for modeling of the 3D organization of chromosomes.	Nature Communications	2019
31722693	Integrative molecular analysis of metastatic hepatocellular carcinoma.	BMC Medical Genomics	2019
31219803	A large-scale CRISPR screen and identification of essential genes in cellular senescence bypass.	Aging	2019
31251911	Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription.	Cell	2019
29422670	Alterations of specific chromatin conformation affect ATRA-induced leukemia cell differentiation.	Cell Death and Disease	2018
28968643	CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data.		2018
29936497	Regulatory RNA binding proteins contribute to the transcriptome-wide splicing alterations in human cellular senescence.	Aging	2018
30024379	Inhibiting the integrated stress response pathway prevents aberrant chondrocyte differentiation thereby alleviating chondrodysplasia.	eLife	2018
30184171	HiCDB: a sensitive and robust method for detecting contact domain boundaries.	Nucleic Acids Research	2018
29625896	Co-inhibitory Molecule B7 Superfamily Member 1 Expressed by Tumor-Infiltrating Myeloid Cells Induces Dysfunction of Anti-tumor CD8<sup>+</sup> T Cells.	Immunity	2018
29140524	NONCODEV5: a comprehensive annotation database for long non-coding RNAs.	Nucleic Acids Research	2018
29440282	FIND: difFerential chromatin INteractions Detection using a spatial Poisson process.	Genome Research	2018
28294112	Erratum: Mammalian non-CG methylations are conserved and cell-type specific and may have been involved in the evolution of transposon elements.	Scientific Reports	2017
28505334	DIRECTION: a machine learning framework for predicting and characterizing DNA methylation and hydroxymethylation in mammalian genomes.		2017
28630425	Reconstructing cell cycle pseudo time-series via single-cell transcriptome data.	Nature Communications	2017
28539478	A novel epigenetic mini-circuitry contributes to t(8;21) leukaemogenesis.	EMBO Molecular Medicine	2017
28977434	Network embedding-based representation learning for single cell RNA-seq data.	Nucleic Acids Research	2017
28485713	Super-resolution imaging of a 2.5 kb non-repetitive DNA in the nuclear genome using molecular beacon probes.	eLife	2017
28529078	HCSGD: An integrated database of human cellular senescence genes.	Journal of Genetics and Genomics	2017
28703188	Allelic reprogramming of 3D chromatin architecture during early mammalian development.	Nature	2017
29158486	BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions.	Nature Communications	2017
28194035	Recurrently deregulated lncRNAs in hepatocellular carcinoma.	Nat Commun	2017
27625391	ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis.	Nucleic Acids Research	2017
27557708	Analysis of C. elegans muscle transcriptome using trans-splicing-based RNA tagging (SRT).	Nucleic Acids Research	2016
27060148	De novo deciphering three-dimensional chromatin interaction and topological domains by wavelet transformation of epigenetic profiles.	Nucleic Acids Res	2016
26994875	Engineering EMT using 3D micro-scaffold to promote hepatic functions for drug hepatotoxicity evaluation.	Biomaterials	2016
26725182	Validation of SCT Methylation as a Hallmark Biomarker for Lung Cancers.	J Thorac Oncol	2016
27354218	FAT10 Is Critical in Influenza A Virus Replication by Inhibiting Type I IFN.	Journal of Immunology	2016
26586799	NONCODE 2016: an informative and valuable data source of long non-coding RNAs.	Nucleic Acids Research	2016
27573482	Mammalian non-CG methylations are conserved and cell-type specific and may have been involved in the evolution of transposon elements.	Scientific Reports	2016
26694485	3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process.		2015
33758771	SCT Promoter Methylation is a Highly Discriminative Biomarker for Lung and Many Other Cancers.	IEEE Life Sci Lett	2015
25713348	Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit.	Proceedings of the National Academy of Sciences of the United States of America	2015
25505163	A common set of distinct features that characterize noncoding RNAs across multiple species.	Nucleic Acids Res	2015
25693563	Integrative analysis of 111 reference human epigenomes.	Nature	2015