Author details

Full Name

Alla Gagarinova

Affiliation

University of Regina

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37985878	Co-fractionation-mass spectrometry to characterize native mitochondrial protein assemblies in mammalian neurons and brain.	Nat Protoc	2023
33650300	Structural biology of the invasion arsenal of Gram-negative bacterial pathogens.	FEBS J	2022
35835781	Auxotrophic and prototrophic conditional genetic networks reveal the rewiring of transcription factors in Escherichia coli.	Nat Commun	2022
35669347	HPiP: an R/Bioconductor package for predicting host-pathogen protein-protein interactions from protein sequences using ensemble machine learning approach.	Bioinform Adv	2022
34276775	Bioinformatic Analysis of Temporal and Spatial Proteome Alternations During Infections.	Front Genet	2021
33895137	ZapG (YhcB/DUF1043), a novel cell division protein in gamma-proteobacteria linking the Z-ring to septal peptidoglycan synthesis.	J Biol Chem	2021
33660322	Structural and functional study of Legionella pneumophila effector RavA.	Protein Sci	2021
34590268	Quantitative Genetic Screens for Mapping Bacterial Pathways and Functional Networks.	Methods Mol Biol	2021
31504172	A Gaussian process-based definition reveals new and bona fide genetic interactions compared to a multiplicative model in the Gram-negative Escherichia coli.	Bioinformatics	2020
31536960	Rewiring of the Human Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis.	iScience	2019
31844052	Chemical-genetic profiling reveals limited cross-resistance between antimicrobial peptides with different modes of action.	Nat Commun	2019
29176613	Global landscape of cell envelope protein complexes in Escherichia coli.	Nat Biotechnol	2018
29976756	<i>Legionella pneumophila</i> effector Lem4 is a membrane-associated protein tyrosine phosphatase.	J Biol Chem	2018
28786313	Insights from protein-protein interaction studies on bacterial pathogenesis.	Expert Rev Proteomics	2017
26921299	Novel Interactome of Saccharomyces cerevisiae Myosin TypeÂ II Identified by a Modified Integrated Membrane Yeast Two-Hybrid (iMYTH) Screen.	G3 (Bethesda)	2016
27732863	Systematic Genetic Screens Reveal the Dynamic Global Functional Organization of the Bacterial Translation Machinery.	Cell Rep	2016
26774489	Conditional Epistatic Interaction Maps Reveal Global Functional Rewiring of Genome Integrity Pathways in Escherichia coli.	Cell Rep	2016
25316676	Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli.	Bioinformatics	2015
26621460	Investigating Bacterial Protein Synthesis Using Systems Biology Approaches.	Adv Exp Med Biol	2015
24586182	Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli.	PLoS Genet	2014
23973481	Investigating the Ustilago maydis/Zea mays pathosystem: transcriptional responses and novel functional aspects of a fungal calcineurin regulatory B subunit.	Fungal Genet Biol	2013
22517266	Genome-scale genetic manipulation methods for exploring bacterial molecular biology.	Mol Biosyst	2012
23168417	Mapping bacterial functional networks and pathways in Escherichia Coli using synthetic genetic arrays.	J Vis Exp	2012
21219465	A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair.	Mol Microbiol	2011
22125496	Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways.	PLoS Genet	2011
21815091	Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.	Methods Mol Biol	2011
21877280	Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.	Methods Mol Biol	2011
21556145	Ribosome-dependent ATPase interacts with conserved membrane protein in Escherichia coli to modulate protein synthesis and oxidative phosphorylation.	PLoS One	2011
18343851	Association of the transcriptional response of soybean plants with soybean mosaic virus systemic infection.	J Gen Virol	2008
18677321	eSGA: E. coli synthetic genetic array analysis.	Nat Methods	2008
19036160	Recombination analysis of Soybean mosaic virus sequences reveals evidence of RNA recombination between distinct pathotypes.	Virol J	2008
18793685	Identification and molecular characterization of two naturally occurring Soybean mosaic virus isolates that are closely related but differ in their ability to overcome Rsv4 resistance.	Virus Res	2008

1 - 32 of 32

Jiewei Xu

Quantitative Biosciences Institute (QBI), University of California san francisco

Career Start Year 2012

Number of shared co-authors 1

George Kritikos

Institute of Microbiology and Infection, University of Birmingham

Career Start Year 2011

Number of shared co-authors 1

Corey M Hudson

Informatics Institute, University of Missouri

Career Start Year 2011

Number of shared co-authors 0

Matylda Zietek

Career Start Year 2010

Number of shared co-authors 1

Jason M Peters

School of Pharmacy, University of Wisconsin-Madison

Career Start Year 2009

Number of shared co-authors 0

Hendrik Osadnik

University of California San Francisco

Career Start Year 2008

Number of shared co-authors 0

Rikiya Takeuchi

Department of Research and Development, TAUNS Laboratories Inc.

Career Start Year 2008

Number of shared co-authors 3

Anthony L Shiver

Stanford University

Career Start Year 2007

Number of shared co-authors 0

Athanasios Typas

University of California san francisco

Career Start Year 2005

Number of shared co-authors 5

Jodi R Parrish

Center for Molecular Medicine & Genetics, Wayne State University School of Medicine

Career Start Year 2004

Number of shared co-authors 4

Morgan N Price

Lawrence Berkeley National Laboratory

Career Start Year 2004

Number of shared co-authors 1

Intikhab Alam

College of Life Sciences

Career Start Year 2004

Number of shared co-authors 1

Vera van Noort

Leiden University, Institute of Biology Leiden

Career Start Year 2003

Number of shared co-authors 0

Adam M Deutschbauer

Lawrence Berkeley National Laboratory

Career Start Year 2002

Number of shared co-authors 3

Aaron A Best

Hope College

Career Start Year 2001

Number of shared co-authors 1

Jo??o C Setubal

Chemistry Institute, Universidade de Sao Paulo - USP

Career Start Year 2000

Number of shared co-authors 0

Michael T Laub

Massachusetts Institute of Technology

Career Start Year 1998

Number of shared co-authors 1

Marcin P Joachimiak

E O Lawrence Berkeley National Laboratory, UCSF Medical Center, University of California, Berkeley, University of Chicago

Career Start Year 1997

Number of shared co-authors 1

Ana Tereza Ribeiro de Vasconcelos

The National Laboratory for Scientific Computing (LNCC)

Career Start Year 1997

Number of shared co-authors 0

Thomas Brettin

University of Chicago

Career Start Year 1996

Number of shared co-authors 0

Fiona S L Brinkman

Simon Fraser University

Career Start Year 1995

Number of shared co-authors 3

Nicole T Perna

Center for Genomic Science Innovation, University of Wisconsin-Madison

Career Start Year 1992

Number of shared co-authors 2

Ian T Paulsen

Macquarie University

Career Start Year 1992

Number of shared co-authors 3

Lee Ann McCue

Pacific Northwest National Laboratory

Career Start Year 1991

Number of shared co-authors 0

Adam P Arkin

Lawrence Berkeley National Laboratory

Career Start Year 1990

Number of shared co-authors 2

Daniel H Haft

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 1985

Number of shared co-authors 4

James C Hu

Texas A&M University and Texas Agrilife Research, College Station

Career Start Year 1983

Number of shared co-authors 5

George M Weinstock

The Genome Center at Washington University, Washington University School of Medicine

Career Start Year 1979

Number of shared co-authors 1

Deborah A Siegele

Texas A&M University, College Station

Career Start Year 1979

Number of shared co-authors 4

Peter J A Cock

James Hutton Institute

Career Start Year 1974

Number of shared co-authors 0

row(s) 1 - 30 of 30

Mohan Babu

University of Regina

Co-authored papers 26

Sadhna Phanse

University of Regina

Co-authored papers 17

Andrew Emili

Boston University School of Medicine, Boston University

Co-authored papers 14

Jack F Greenblatt

College Street, University of Toronto

Co-authored papers 9

Ashkan Golshani

Ottawa Institute of Systems Biology, Carleton University

Co-authored papers 7

Hiroyuki Aoki

University of Regina

Co-authored papers 7

James Vlasblom

University of Regina

Co-authored papers 6

Viktor Deineko

University of Northern British Columbia

Co-authored papers 5

Ali Hosseinnia

University of Regina

Co-authored papers 5

Matthew Jessulat

University of Regina

Co-authored papers 5

Ashwani Kumar

Bhabha Atomic Research Centre

Co-authored papers 5

Zoran Minic

University of Ottawa

Co-authored papers 4

Sunyoung Kim

University of Regina

Co-authored papers 4

Oxana Pogoutse

University of Toronto

Co-authored papers 4

John Parkinson

The Hospital for Sick Children

Co-authored papers 4

Bahram Samanfar

Agriculture and Agri-Food Canada

Co-authored papers 3

Qingzhou Zhang

Sprott Center for Stem Cell Research, Ottawa Hospital Research Institute

Co-authored papers 3

Cedoljub Bundalovic-Torma

University of Toronto

Co-authored papers 3

John Harry Caufield

American Heart Association, American Society for Microbiology, International Society for Computational Biology, Lawrence Berkeley National Laboratory, University of California Los Angeles, University of Delaware, Virginia Commonwealth University

Co-authored papers 2

Gary D Bader

University of Toronto

Co-authored papers 2

Huiming Ding

Massachusetts Institute of Technology

Co-authored papers 2

Walid A Houry

University of Toronto

Co-authored papers 2

Jitender Mehla

University of Oklahoma