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Author Details

Evgeny M Zdobnov
University of Geneva Medical School
1995
89
48
PMIDPaper TitleJournal TitlePublished Year
36350662OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity.Nucleic Acids Res2023
35726916Bacterial, Phytoplankton, and Viral Distributions and Their Biogeochemical Contexts in Meromictic Lake Cadagno Offer Insights into the Proterozoic Ocean Microbial Loop.mBio2022
33196836OrthoDB in 2020: evolutionary and functional annotations of orthologs.Nucleic Acids Res2021
33750380The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control.BMC Biol2021
34936221BUSCO: Assessing Genomic Data Quality and Beyond.Curr Protoc2021
34442837<i>Enterovirus D</i>: A Small but Versatile Species.Microorganisms2021
34325695Publisher Correction: The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control.BMC Biol2021
34320186BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes.Mol Biol Evol2021
32442304Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera.Genome Biol Evol2020
31969194Gene content evolution in the arthropods.Genome Biol2020
31937263Enhanced genome assembly and a new official gene set for Tribolium castaneum.BMC Genomics2020
31778187The Genome of the Blind Soil-Dwelling and Ancestrally Wingless Dipluran Campodea augens: A Key Reference Hexapod for Studying the Emergence of Insect Innovations.Genome Biol Evol2020
33070780Genome-enabled insights into the biology of thrips as crop pests.BMC Biol2020
32311023Phigaro: high-throughput prophage sequence annotation.Bioinformatics2020
29787887Human pegivirus persistence in human blood virome after allogeneic haematopoietic stem-cell transplantation.Clin Microbiol Infect2019
31921732Identification of Viral Signatures Using High-Throughput Sequencing on Blood of Patients With Kawasaki Disease.Front Pediatr2019
31431002Viral Sequences Detection by High-Throughput Sequencing in Cerebrospinal Fluid of Individuals with and without Central Nervous System Disease.Genes (Basel)2019
30395283OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs.Nucleic Acids Res2019
30414111Using BUSCO to Assess Insect Genomic Resources.Methods Mol Biol2019
28797733Propagation of respiratory viruses in human airway epithelia reveals persistent virus-specific signatures.J Allergy Clin Immunol2018
30022500Metagenomics analysis of the virome of 300 concentrates from a Swiss platelet bank.Vox Sang2018
30014616ACI-1 beta-lactamase is widespread across human gut microbiomes in Negativicutes due to transposons harboured by tailed prophages.Environ Microbiol2018
30386377<i>In silico</i> Analysis Suggests Common Appearance of scaRNAs in Type II Systems and Their Association With Bacterial Virulence.Front Genet2018
29220515BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics.Mol Biol Evol2018
27899580OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs.Nucleic Acids Res2017
28137743Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders.Genome Biol Evol2017
28497550Metagenomics analysis of red blood cell and fresh-frozen plasma units.Transfusion2017
28466789Understanding key features of bacterial restriction-modification systems through quantitative modeling.BMC Syst Biol2017
29213263Scoring Targets of Transcription in Bacteria Rather than Focusing on Individual Binding Sites.Front Microbiol2017
26836814Unique features of a global human ectoparasite identified through sequencing of the bed bug genome.Nat Commun2016
26527719CEGA--a catalog of conserved elements from genomic alignments.Nucleic Acids Res2016
27832824Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface.Genome Biol2016
27599474Astrovirus VA1 identified by next-generation sequencing in a nasopharyngeal specimen of a febrile Tanzanian child with acute respiratory disease of unknown etiology.Emerg Microbes Infect2016
27381218Astrovirus VA1 identified by next-generation sequencing in a nasopharyngeal specimen of a febrile Tanzanian child with acute respiratory disease of unknown etiology.Emerg Microbes Infect2016
27088842Astrovirus MLB2, a New Gastroenteric Virus Associated with Meningitis and Disseminated Infection.Emerg Infect Dis2016
26951779Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and Superdynamic Intron Evolution.Genome Biol Evol2016
25428351OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software.Nucleic Acids Res2015
26201298Clinical features and viral kinetics in a rapidly cured patient with Ebola virus disease: a case report.Lancet Infect Dis2015
26059717BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.Bioinformatics2015
26108605Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions.Nat Commun2015
25908251The genomes of two key bumblebee species with primitive eusocial organization.Genome Biol2015
25985905E119D Neuraminidase Mutation Conferring Pan-Resistance to Neuraminidase Inhibitors in an A(H1N1)pdm09 Isolate From a Stem-Cell Transplant Recipient.J Infect Dis2015
25660540A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor.Curr Biol2015
25658528Toscana virus meningitis case in Switzerland: an example of the ezVIR bioinformatics pipeline utility for the identification of emerging viruses.Clin Microbiol Infect2015
24347514Comprehensive metagenomic analysis of glioblastoma reveals absence of known virus despite antiviral-like type I interferon gene response.Int J Cancer2014
25480033Gene age predicts the strength of purifying selection acting on gene expression variation in humans.Am J Hum Genet2014
25009204Repression of arginase-2 expression in dendritic cells by microRNA-155 is critical for promoting T cell proliferation.J Immunol2014
25009045Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot study.J Clin Microbiol2014
24792157Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.Nucleic Acids Res2014
23180791OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs.Nucleic Acids Res2013
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Collaborators

University of Lausanne
Co-authored papers 26
Geneva University Hospital
Co-authored papers 22
University of Geneva Medical School
Co-authored papers 20
Baylor College of Medicine
Co-authored papers 13
Baylor College of Medicine
Co-authored papers 13
University of Illinois at Champaign-Urbana
Co-authored papers 12
Institute of Biology, University of Neuchatel
Co-authored papers 11
Baylor College of Medicine
Co-authored papers 11
Baylor College of Medicine
Co-authored papers 11
The Research Institute of Molecular Pathology
Co-authored papers 10
Wayne State University
Co-authored papers 10
Baylor College of Medicine
Co-authored papers 10
Baylor College of Medicine
Co-authored papers 9
Institute of Advanced Energy, Kyoto University
Co-authored papers 9
University of Rochester
Co-authored papers 9
Baylor College of Medicine
Co-authored papers 8
University of Wurzburg
Co-authored papers 7
USDA-ARS
Co-authored papers 7
Baylor College of Medicine
Co-authored papers 6
University of Zurich
Co-authored papers 6
Baylor College of Medicine
Co-authored papers 6
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 5
USDA-ARS Bee Research Laboratory
Co-authored papers 5
University of Copenhagen, Universitetsparken 15
Co-authored papers 5
Baylor College of Medicine
Co-authored papers 5
University of Cincinnati College of Medicine
Co-authored papers 5
Baylor College of Medicine
Co-authored papers 5
University of Tennessee Health Science Center
Co-authored papers 5
Xi'an Jiaotong-Liverpool University
Co-authored papers 5
University of Copenhagen, Universitetsparken 15
Co-authored papers 5