Author details

Full Name

Davis J McCarthy

Affiliation

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37035431	ADMANI: Annotated Digital Mammograms and Associated Non-Image Datasets.		2023
37603481	An Interpretable and Accurate Deep-learning Diagnosis Framework Modelled with Fully and Semi-supervised Reciprocal Learning.		2023
36329399	Trade-off between conservation of biological variation and batch effect removal in deep generative modeling for single-cell transcriptomics.	BMC Bioinformatics	2022
34911537	splatPop: simulating population scale single-cell RNA sequencing data.		2021
34167583	Optimizing expression quantitative trait locus mapping workflows for single-cell studies.		2021
33874978	Personalized genome structure via single gamete sequencing.		2021
33288955	Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data.		2021
32518403	Benchmarking single-cell RNA-sequencing protocols for cell atlas projects.	Nat Biotechnol	2020
32033589	Eleven grand challenges in single-cell data science.	Genome Biol	2020
30744673	Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity.	Genome Biol	2019
30595546	Method to Synchronize Cell Cycle of Human Pluripotent Stem Cells without Affecting Their Fundamental Characteristics.	Stem Cell Reports	2019
29360107	Erratum: Sequence data and association statistics from 12,940 type 2 diabetes cases and controls.	Sci Data	2018
29091079	NOX1 loss-of-function genetic variants in patients with inflammatory bowel disease.	Mucosal Immunol	2018
28088763	Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R.		2017
28489815	Common genetic variation drives molecular heterogeneity in human iPSCs.	Nature	2017
28614302	Corrigendum: Common genetic variation drives molecular heterogeneity in human iPSCs.	Nature	2017
29257133	Sequence data and association statistics from 12,940 type 2 diabetes cases and controls.	Sci Data	2017
29115968	f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq.	Genome Biol	2017
27398621	The genetic architecture of type 2 diabetes.	Nature	2016
26887813	Classification of low quality cells from single-cell RNA-seq data.	Genome Biol	2016
25985138	Factors influencing success of clinical genome sequencing across a broad spectrum of disorders.	Nat Genet	2015
25922517	MOZ and BMI1 play opposing roles during Hox gene activation in ES cells and in body segment identity specification in vivo.	Proc Natl Acad Sci U S A	2015
24944579	Choice of transcripts and software has a large effect on variant annotation.	Genome Med	2014
23975260	Count-based differential expression analysis of RNA sequencing data using R and Bioconductor.	Nat Protoc	2013
23104842	Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates.	Stat Appl Genet Mol Biol	2012
22287627	Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.	Nucleic Acids Res	2012
21736602	Aliskiren increases bradykinin and tissue kallikrein mRNA levels in the heart.	Clin Exp Pharmacol Physiol	2011
19910308	edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.	Bioinformatics	2010
19176553	Testing significance relative to a fold-change threshold is a TREAT.	Bioinformatics	2009