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Author Details

Hiroyuki Aoki
University of Regina
1991
39
21
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35848500<i>In vitro</i> toxicity screening of amorphous silica nanoparticles using mitochondrial fraction exposure followed by MS-based proteomic analysis.Analyst2022
35616533Development of a Method Combining Peptidiscs and Proteomics to Identify, Stabilize, and Purify a Detergent-Sensitive Membrane Protein Assembly.J Proteome Res2022
35835781Auxotrophic and prototrophic conditional genetic networks reveal the rewiring of transcription factors in Escherichia coli.Nat Commun2022
34244791The conserved Tpk1 regulates non-homologous end joining double-strand break repair by phosphorylation of Nej1, a homolog of the human XLF.Nucleic Acids Res2021
34582199Human-Soybean Allergies: Elucidation of the Seed Proteome and Comprehensive Protein-Protein Interaction Prediction.J Proteome Res2021
32641451Protein Interactions of the Mechanosensory Proteins Wsc2 and Wsc3 for Stress Resistance in <i>Saccharomyces cerevisiae</i>.G3 (Bethesda)2020
30733383Identification and Functional Testing of Novel Interacting Protein Partners for the Stress Sensors Wsc1p and Mid2p of <i>Saccharomyces cerevisiae</i>.G3 (Bethesda)2019
31536960Rewiring of the Human Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis.iScience2019
29176613Global landscape of cell envelope protein complexes in Escherichia coli.Nat Biotechnol2018
28065597A Global Analysis of the Receptor Tyrosine Kinase-Protein Phosphatase Interactome.Mol Cell2017
28298427Systematic protein-protein interaction mapping for clinically relevant human GPCRs.Mol Syst Biol2017
29128334A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals New Mechanisms of Redox Homeostasis and NF-κB Signaling.Cell Syst2017
26921299Novel Interactome of Saccharomyces cerevisiae Myosin Type II Identified by a Modified Integrated Membrane Yeast Two-Hybrid (iMYTH) Screen.G3 (Bethesda)2016
27732863Systematic Genetic Screens Reveal the Dynamic Global Functional Organization of the Bacterial Translation Machinery.Cell Rep2016
25546499Yeast mitochondrial protein-protein interactions reveal diverse complexes and disease-relevant functional relationships.J Proteome Res2015
26949739Identification of Human Neuronal Protein Complexes Reveals Biochemical Activities and Convergent Mechanisms of Action in Autism Spectrum Disorders.Cell Syst2015
25963654Spindle Checkpoint Factors Bub1 and Bub2 Promote DNA Double-Strand Break Repair by Nonhomologous End Joining.Mol Cell Biol2015
24586182Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli.PLoS Genet2014
22128152Post-translational modification by β-lysylation is required for activity of Escherichia coli elongation factor P (EF-P).J Biol Chem2012
21556145Ribosome-dependent ATPase interacts with conserved membrane protein in Escherichia coli to modulate protein synthesis and oxidative phosphorylation.PLoS One2011
20225144In vivo investigation of protein-protein interactions for helicases using tandem affinity purification.Methods Mol Biol2010
18201202Interactions of elongation factor EF-P with the Escherichia coli ribosome.FEBS J2008
16983699Investigating the in vivo activity of the DeaD protein using protein-protein interactions and the translational activity of structured chloramphenicol acetyltransferase mRNAs.J Cell Biochem2007
16495476Molecular localization of a ribosome-dependent ATPase on Escherichia coli ribosomes.Nucleic Acids Res2006
17015650Physiological analysis of the stringent response elicited in an extreme thermophilic bacterium, Thermus thermophilus.J Bacteriol2006
16788203EshA accentuates ppGpp accumulation and is conditionally required for antibiotic production in Streptomyces coelicolor A3(2).J Bacteriol2006
15694371Protected nucleotide G2608 in 23S rRNA confers resistance to oxazolidinones in E. coli.Biochem Biophys Res Commun2005
11897593Oxazolidinone antibiotics target the P site on Escherichia coli ribosomes.Antimicrob Agents Chemother2002
12209000Evolutionary conservation of reactions in translation.Microbiol Mol Biol Rev2002
10987361Peptide bond synthesis: function of the efp gene product.Biol Chem2000
10607404Identification of a ribosomal ATPase in Escherichia coli cells.Biochimie1999
10216955Molecular characterization of a prokaryotic translation factor homologous to the eukaryotic initiation factor eIF4A.Int J Biochem Cell Biol1999
9835522The oxazolidinone linezolid inhibits initiation of protein synthesis in bacteria.Antimicrob Agents Chemother1998
9405429The gene encoding the elongation factor P protein is essential for viability and is required for protein synthesis.J Biol Chem1997
9195040Molecular characterization of the prokaryotic efp gene product involved in a peptidyltransferase reaction.Biochimie1997
8725011The ribosome as affinity matrix': efficient purification scheme for translation factors.Biochimie1996
8223640Reconstruction of translation. Evidence for the involvement of the rescue protein in the association/dissociation of ribosomal subunits.Eur J Biochem1993
1425658The asparaginyl-tRNA synthetase gene encodes one of the complementing factors for thermosensitive translation in the Escherichia coli mutant strain, N4316.Eur J Biochem1992
1956781Cloning, sequencing and overexpression of the gene for prokaryotic factor EF-P involved in peptide bond synthesis.Nucleic Acids Res1991
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Collaborators

M C Ganoza
C. H. Best Institute, University of Toronto
Co-authored papers 19
Mohan Babu
University of Regina
Co-authored papers 18
Sadhna Phanse
University of Regina
Co-authored papers 15
Ashkan Golshani
Ottawa Institute of Systems Biology, Carleton University
Co-authored papers 12
Matthew Jessulat
University of Regina
Co-authored papers 12
Ramy H Malty
University of Toronto, University of Regina
Co-authored papers 8
Zoran Minic
University of Ottawa
Co-authored papers 8
Alla Gagarinova
University of Regina
Co-authored papers 7
Viktor Deineko
University of Northern British Columbia
Co-authored papers 7
Andrew Emili
Boston University School of Medicine, Boston University
Co-authored papers 7
James Vlasblom
University of Regina
Co-authored papers 6
Jianhua Xu
College of Pharmaceutical Sciences, Zhejian University
Co-authored papers 5
Bahram Samanfar
Agriculture and Agri-Food Canada
Co-authored papers 5
Igor Stagljar
University of Toronto, Canada Mediterranean Institute for Life Sciences
Co-authored papers 5
Ke Jin
West China Hospital, Sichuan University
Co-authored papers 4
Qingzhou Zhang
Sprott Center for Stem Cell Research, Ottawa Hospital Research Institute
Co-authored papers 4
Mohsen Hooshyar
Department of Biology and Ottawa Institute of Systems Biology, Carleton University
Co-authored papers 4
Jack F Greenblatt
College Street, University of Toronto
Co-authored papers 4
Daniel Burnside
Ottawa Institute of Systems Biology, University of Ottawa, Carleton University
Co-authored papers 4
Zhaolei Zhang
University of Toronto
Co-authored papers 3
Sunyoung Kim
University of Regina
Co-authored papers 3
Bhanu Prasad Venkatesulu
Loyola University, Illinois Edward Hines Veteran Affairs Hospital
Co-authored papers 3
Ashwani Kumar
Bhabha Atomic Research Centre
Co-authored papers 3
John Parkinson
The Hospital for Sick Children
Co-authored papers 3
Tanya Freywald
University of Saskatchewan
Co-authored papers 2
Igor Jurisica
Schroeder Arthritis Institute
Co-authored papers 2
Cedoljub Bundalovic-Torma
University of Toronto
Co-authored papers 2
Hongbo Guo
Beihang University
Co-authored papers 2
Andrew Freywald
College of Medicine, University of Saskatchewan
Co-authored papers 2
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 2
Release 1.2