Author details

Full Name

David S Campbell

Affiliation

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
33067471	DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics.	Nat Commun	2020
33184295	A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS.	Sci Data	2020
31290668	PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline.	J Proteome Res	2019
30084848	A tissue-based draft map of the murine MHC class I immunopeptidome.	Sci Data	2018
28985418	The SysteMHC Atlas project.	Nucleic Acids Res	2018
30230343	Flexible and Fast Mapping of Peptides to a Proteome with ProteoMapper.	J Proteome Res	2018
27924013	The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition.	Nucleic Acids Res	2017
28938075	The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays.	J Proteome Res	2017
28486464	Discovering and linking public omics data sets using the Omics Discovery Index.	Nat Biotechnol	2017
28065881	An integrated transcriptomics-guided genome-wide promoter analysis and next-generation proteomics approach to mine factor(s) regulating cellular differentiation.	DNA Res	2017
27575953	Identification of Organ-Enriched Protein Biomarkers of Acute Liver Injury by Targeted Quantitative Proteomics of Blood in Acetaminophen- and Carbon-Tetrachloride-Treated Mouse Models and Acetaminophen Overdose Patients.	J Proteome Res	2016
27453469	Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome.	Cell	2016
27577934	Tiered Human Integrated Sequence Search Databases for Shotgun Proteomics.	J Proteome Res	2016
26154972	An open-source computational and data resource to analyze digital maps of immunopeptidomes.	Elife	2015
26139527	State of the Human Proteome in 2014/2015 As Viewed through PeptideAtlas: Enhancing Accuracy and Coverage through the AtlasProphet.	J Proteome Res	2015
24997998	Quantitative proteomic analysis reveals effects of epidermal growth factor receptor (EGFR) on invasion-promoting proteins secreted by glioblastoma cells.	Mol Cell Proteomics	2014
25977788	A repository of assays to quantify 10,000 human proteins by SWATH-MS.	Sci Data	2014
24939129	Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics.	Curr Protoc Bioinformatics	2014
23408683	N-glycoprotein SRMAtlas: a resource of mass spectrometric assays for N-glycosites enabling consistent and multiplexed protein quantification for clinical applications.	Mol Cell Proteomics	2013
23684311	The Mtb proteome library: a resource of assays to quantify the complete proteome of Mycobacterium tuberculosis.	Cell Host Microbe	2013
23334424	A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis.	Nature	2013
22159873	TraML--a standard format for exchange of selected reaction monitoring transition lists.	Mol Cell Proteomics	2012
22318887	PASSEL: the PeptideAtlas SRMexperiment library.	Proteomics	2012
21632744	A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas.	Mol Cell Proteomics	2011
21414234	ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry.	BMC Bioinformatics	2011
21772258	Absolute quantification of microbial proteomes at different states by directed mass spectrometry.	Mol Syst Biol	2011
21177495	Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast.	Sci Signal	2010
18501003	Correlation of mRNA and protein levels: cell type-specific gene expression of cluster designation antigens in the prostate.	BMC Genomics	2008
19087345	Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.	BMC Bioinformatics	2008
19060867	PhosphoPep--a database of protein phosphorylation sites in model organisms.	Nat Biotechnol	2008
20157627	Differential Plasma Glycoproteome of p19 Skin Cancer Mouse Model Using the Corra Label-Free LC-MS Proteomics Platform.	Clin Proteomics	2008
18974732	A database of mass spectrometric assays for the yeast proteome.	Nat Methods	2008
18511481	An integrated, directed mass spectrometric approach for in-depth characterization of complex peptide mixtures.	Mol Cell Proteomics	2008
18327244	Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).	Nat Biotechnol	2008
18072977	The urologic epithelial stem cell database (UESC) - a web tool for cell type-specific gene expression and immunohistochemistry images of the prostate and bladder.	BMC Urol	2007
20740054	Systematic investigation of lycopene effects in LNCaP cells by use of novel large-scale proteomic analysis software.	Proteomics Clin Appl	2007
17940529	PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells.	Mol Syst Biol	2007
16901227	Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE).	OMICS	2006
16901351	UniPep--a database for human N-linked glycosites: a resource for biomarker discovery.	Genome Biol	2006
16756676	SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology.	BMC Bioinformatics	2006
16638148	Transcriptomes of human prostate cells.	BMC Genomics	2006