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Author Details

John Brestelli
University of Pennsylvania
2001
28
24
PMIDPaper TitleJournal TitlePublished Year
37953350VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023.Nucleic Acids Res2024
34718728VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center.Nucleic Acids Res2022
29106667MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments.Nucleic Acids Res2018
27903906EuPathDB: the eukaryotic pathogen genomics database resource.Nucleic Acids Res2017
23175615EuPathDB: the eukaryotic pathogen database.Nucleic Acids Res2013
22064857FungiDB: an integrated functional genomics database for fungi.Nucleic Acids Res2012
20974635AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species.Nucleic Acids Res2011
19843604TriTrypDB: a functional genomic resource for the Trypanosomatidae.Nucleic Acids Res2010
19914931EuPathDB: a portal to eukaryotic pathogen databases.Nucleic Acids Res2010
18957442PlasmoDB: a functional genomic database for malaria parasites.Nucleic Acids Res2009
18824479GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis.Nucleic Acids Res2009
18071024Defining pancreatic endocrine precursors and their descendants.Diabetes2008
18003657ToxoDB: an integrated Toxoplasma gondii database resource.Nucleic Acids Res2008
17071715EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes.Nucleic Acids Res2007
17403778Expansion of adult beta-cell mass in response to increased metabolic demand is dependent on HNF-4alpha.Genes Dev2007
16410542Identification of transcriptional targets during pancreatic growth after partial pancreatectomy and exendin-4 treatment.Physiol Genomics2006
16725306Novel genes identified by manual annotation and microarray expression analysis in the pancreas.Genomics2006
16412588PANDER-induced cell-death genetic networks in islets reveal central role for caspase-3 and cyclin-dependent kinase inhibitor 1A (p21).Gene2006
15546871Identification of transcriptional networks during liver regeneration.J Biol Chem2005
16110340Glucocorticoid receptor-dependent gene regulatory networks.PLoS Genet2005
16055718Transcriptional networks in the liver: hepatocyte nuclear factor 6 function is largely independent of Foxa2.Mol Cell Biol2005
15314688Foxa2 regulates multiple pathways of insulin secretion.J Clin Invest2004
15252040Mild nephrogenic diabetes insipidus caused by Foxa1 deficiency.J Biol Chem2004
12829622Transcriptional program of the endocrine pancreas in mice and humans.Diabetes2003
12080087Neurogenin 3 is essential for the proper specification of gastric enteroendocrine cells and the maintenance of gastric epithelial cell identity.Genes Dev2002
12209019Comparison of different labeling methods for two-channel high-density microarray experiments.Physiol Genomics2002
12086925Functional genomics of the endocrine pancreas: the pancreas clone set and PancChip, new resources for diabetes research.Diabetes2002
11546810Foxa3 (hepatocyte nuclear factor 3gamma ) is required for the regulation of hepatic GLUT2 expression and the maintenance of glucose homeostasis during a prolonged fast.J Biol Chem2001
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Collaborators

Christian J Stoeckert
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 17
Klaus H Kaestner
Department of Genetics and Institute for Diabetes, University of Pennsylvania
Co-authored papers 16
Deborah F Pinney
University of Pennsylvania
Co-authored papers 13
David S Roos
University of Pennsylvania
Co-authored papers 12
Jessica C Kissinger
University of Georgia
Co-authored papers 12
Brian P Brunk
University of Pennsylvania
Co-authored papers 11
Bindu Gajria
University of Pennsylvania
Co-authored papers 10
Gregory R Grant
Perelman School of Medicine, University of Pennsylvania Philadelphia
Co-authored papers 7
Peter White
The Ohio State University
Co-authored papers 6
Joan Mazzarelli
Center for Bioinformatics, University of Pennsylvania
Co-authored papers 4
L M Scearce
University of Pennsylvania
Co-authored papers 4
John A Miller
Co-authored papers 4
Christiane Hertz-Fowler
Institute of Integrative Biology, University of Liverpool
Co-authored papers 3
Catherine S Lee
Children's Hospital of Philadelphia
Co-authored papers 3
Elisabetta Manduchi
Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia
Co-authored papers 3
Marshall Alan Permutt
Washington University School of Medicine
Co-authored papers 2
Jonathan Schug
University of Pennsylvania Perelman School of Medicine
Co-authored papers 2
Athanasios Arsenlis
Lawrence Livermore National Laboratory
Co-authored papers 2
Jie Zheng
University of Pennsylvania Perelman School of Medicine
Co-authored papers 2
Sandra W Clifton
Garvan Institute of Medical Research
Co-authored papers 2
Angel Pizarro
The Institute for Translational Medicine and Therapeutics, University of Pennsylvania
Co-authored papers 2
Juliana Brown
Co-authored papers 2
Michael Dunn
Co-authored papers 1
Matthew Berriman
Wellcome Sanger Institute
Co-authored papers 1
Shannon K McWeeney
Oregon Health & Science University, University of California Berkeley
Co-authored papers 1
Jason E Stajich
University of California-Riverside
Co-authored papers 1
Jane M Carlton
Center for Genomics and Systems Biology
Co-authored papers 1
Sascha Steinbiss
Wellcome Sanger Institute
Co-authored papers 1
Todd W Harris
Ontario Institute for Cancer Research
Co-authored papers 1
Todd M Brusko
College of Medicine, Diabetes Institute, University of Florida
Co-authored papers 1
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