Author details

Full Name

Danica Galoni?? Fujimori

Affiliation

University of California San Francisco

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36495919	Chromatin Sensing by the Auxiliary Domains of KDM5C Regulates Its Demethylase Activity and Is Disrupted by X-linked Intellectual Disability Mutations.	J Mol Biol	2023
38014974	Angucyclinones rescue PhLOPS<sub>A</sub> antibiotic activity by inhibiting Cfr-dependent antibiotic resistance.	mBio	2023
37832177	Recent developments in catalysis and inhibition of the Jumonji histone demethylases.	Curr Opin Struct Biol	2023
36948085	Chemical tools targeting readers of lysine methylation.	Curr Opin Chem Biol	2023
37294077	Structure-Based Discovery of Inhibitors of the SARS-CoV-2 Nsp14 N7-Methyltransferase.	J Med Chem	2023
35165456	Structural basis for context-specific inhibition of translation by oxazolidinone antibiotics.	Nat Struct Mol Biol	2022
35839775	Viral E protein neutralizes BET protein-mediated post-entry antagonism of SARS-CoV-2.	Cell Rep	2022
35756531	Covalent labeling of a chromatin reader domain using proximity-reactive cyclic peptides.	Chem Sci	2022
36371847	Editorial overview: Catalysis and regulation: The chemistry of catalysis.	Curr Opin Struct Biol	2022
35866897	First-in-Class Allosteric Inhibitors of DNMT3A Disrupt Protein-Protein Interactions and Induce Acute Myeloid Leukemia Cell Differentiation.	J Med Chem	2022
35985635	Catching BETs by viruses.	Biochim Biophys Acta Gene Regul Mech	2022
35015630	Directed evolution of the rRNA methylating enzyme Cfr reveals molecular basis of antibiotic resistance.	Elife	2022
33314922	Exploring the Ligand Preferences of the PHD1 Domain of Histone Demethylase KDM5A Reveals Tolerance for Modifications of the Q5 Residue of Histone 3.	ACS Chem Biol	2021
34085241	miCLIP-MaPseq Identifies Substrates of Radical SAM RNA-Methylating Enzyme Using Mechanistic Cross-Linking and Mismatch Profiling.	Methods Mol Biol	2021
32353859	A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.	Nature	2020
31989172	Assessment of the nucleotide modifications in the high-resolution cryo-electron microscopy structure of the Escherichia coli 50S subunit.	Nucleic Acids Res	2020
31985200	Extended Recognition of the Histone H3 Tail by Histone Demethylase KDM5A.	Biochemistry	2020
32758979	Domain cross-talk in regulation of histone modifications: Molecular mechanisms and targeting opportunities.	Curr Opin Chem Biol	2020
32475402	Dissecting contributions of catalytic and reader domains in regulation of histone demethylation.	Methods Enzymol	2020
30626866	Histone H3 binding to the PHD1 domain of histone demethylase KDM5A enables active site remodeling.	Nat Commun	2019
31685464	<i>cfr</i>(B), <i>cfr</i>(C), and a New <i>cfr</i>-Like Gene, <i>cfr</i>(E), in Clostridium difficile Strains Recovered across Latin America.	Antimicrob Agents Chemother	2019
29782154	miCLIP-MaPseq, a Substrate Identification Approach for Radical SAM RNA Methylating Enzymes.	J Am Chem Soc	2018
29059606	Mutations in RNA methylating enzymes in disease.	Curr Opin Chem Biol	2017
26699912	Docking and Linking of Fragments To Discover Jumonji Histone Demethylase Inhibitors.	J Med Chem	2016
27902775	Determinants of tRNA Recognition by the Radical SAM Enzyme RlmN.	PLoS One	2016
27614207	Editorial overview: Chemical genetics and epigenetics.	Curr Opin Chem Biol	2016
27357682	Htm1p-Pdi1p is a folding-sensitive mannosidase that marks N-glycoproteins for ER-associated protein degradation.	Proc Natl Acad Sci U S A	2016
27496281	Antibiotic resistance evolved via inactivation of a ribosomal RNA methylating enzyme.	Nucleic Acids Res	2016
26747609	Opposing Chromatin Signals Direct and Regulate the Activity of Lysine Demethylase 4C (KDM4C).	J Biol Chem	2016
25533783	Product binding enforces the genomic specificity of a yeast polycomb repressive complex.	Cell	2015
26323614	Improved Peak Detection and Deconvolution of Native Electrospray Mass Spectra from Large Protein Complexes.	J Am Soc Mass Spectrom	2015
26496625	Functional coupling between writers, erasers and readers of histone and DNA methylation.	Curr Opin Struct Biol	2015
26253978	Radical SAM-Mediated Methylation of Ribosomal RNA.	Methods Enzymol	2015
25686748	Histone demethylase KDM5A is regulated by its reader domain through a positive-feedback mechanism.	Nat Commun	2015
23398247	Site-specific and regiospecific installation of methylarginine analogues into recombinant histones and insights into effector protein binding.	J Am Chem Soc	2013
23835516	Radical SAM-mediated methylation reactions.	Curr Opin Chem Biol	2013
23601638	Reconstitution of nucleosome demethylation and catalytic properties of a Jumonji histone demethylase.	Chem Biol	2013
22208312	The chemistry of peptidyltransferase center-targeted antibiotics: enzymatic resistance and approaches to countering resistance.	ACS Chem Biol	2012
23088750	Covalent intermediate in the catalytic mechanism of the radical S-adenosyl-L-methionine methyl synthase RlmN trapped by mutagenesis.	J Am Chem Soc	2012
23085277	Protein and nucleic acid methylating enzymes: mechanisms and regulation.	Curr Opin Chem Biol	2012
21368151	RNA methylation by radical SAM enzymes RlmN and Cfr proceeds via methylene transfer and hydride shift.	Proc Natl Acad Sci U S A	2011
20184321	RlmN and Cfr are radical SAM enzymes involved in methylation of ribosomal RNA.	J Am Chem Soc	2010
21168760	A novel enzymatic rearrangement.	Chem Biol	2010
19281171	Structural analysis of an open active site conformation of nonheme iron halogenase CytC3.	J Am Chem Soc	2009
19295524	Hypoxia sensing goes gauche.	Nat Chem Biol	2009
18291314	Halogenation strategies in natural product biosynthesis.	Chem Biol	2008
17209546	Characterization of the aminocarboxycyclopropane-forming enzyme CmaC.	Biochemistry	2007
17967013	CD and MCD of CytC3 and taurine dioxygenase: role of the facial triad in alpha-KG-dependent oxygenases.	J Am Chem Soc	2007
17940045	Cloning and characterization of the biosynthetic gene cluster for kutznerides.	Proc Natl Acad Sci U S A	2007
17939667	Spectroscopic evidence for a high-spin Br-Fe(IV)-oxo intermediate in the alpha-ketoglutarate-dependent halogenase CytC3 from Streptomyces.	J Am Chem Soc	2007

1 - 50 of 60

Audrone Lapinaite

Arizona State University

Career Start Year 2012

Number of shared co-authors 0

Zhi Lin

Shanghai Jiao Tong University

Career Start Year 2012

Number of shared co-authors 2

Yael David

Tri-Institutional PhD Program in Chemical Biology

Career Start Year 2010

Number of shared co-authors 0

Amit Choudhary

Broad Institute of MIT and Harvard

Career Start Year 2009

Number of shared co-authors 0

Chengqi Yi

Peking University

Career Start Year 2008

Number of shared co-authors 0

Lian Duan

Brown University

Career Start Year 2006

Number of shared co-authors 0

Lana Saleh

The Pennsylvania State University, University Park

Career Start Year 2003

Number of shared co-authors 0

David Marciano

Stanford Cardiovascular Institute (L.W., Stanford University School of Medicine

Career Start Year 2003

Number of shared co-authors 2

Jungwook Kim

Gwangju Institute of Science and Technology

Career Start Year 2001

Number of shared co-authors 2

Chuan He

Institute of Hematology, West China Hospital of Sichuan University

Career Start Year 1999

Number of shared co-authors 1

Jeffrey B Bonanno

Albert Einstein College of Medicine

Career Start Year 1999

Number of shared co-authors 2

Dalia Barsyte-Lovejoy

University of Toronto, College St

Career Start Year 1999

Number of shared co-authors 4

Hamid R Kalhor

Sharif University of Technology

Career Start Year 1998

Number of shared co-authors 0

Stephen M Fuchs

Tufts University

Career Start Year 1998

Number of shared co-authors 3

Yury Patskovsky

New York University Grossman School of Medicine

Career Start Year 1998

Number of shared co-authors 2

Stephen A McMahon

University of St Andrews

Career Start Year 1998

Number of shared co-authors 1

Ragna Sack

Friedrich Miescher Institute for Biomedical Research

Career Start Year 1997

Number of shared co-authors 2

Jinrong Min

Central China Normal University

Career Start Year 1994

Number of shared co-authors 6

Matthew R Redinbo

University of North Carolina at Chapel Hill

Career Start Year 1993

Number of shared co-authors 0

Tom W Muir

Princeton University

Career Start Year 1993

Number of shared co-authors 3

Youngchang Kim

Argonne National Laboratory

Career Start Year 1993

Number of shared co-authors 3

Squire J Booker

The Pennsylvania State University, University Park

Career Start Year 1992

Number of shared co-authors 1

P??r Nordlund

Karolinska Institutet, BioClinicum J6

Career Start Year 1989

Number of shared co-authors 2

Cheryl H Arrowsmith

University of Toronto

Career Start Year 1989

Number of shared co-authors 10

Liang Tong

Columbia University

Career Start Year 1988

Number of shared co-authors 5

Ronen Marmorstein

Perelman School of Medicine, University of Pennsylvania

Career Start Year 1987

Number of shared co-authors 6

Ronald T Raines

Massachusetts Institute of Technology

Career Start Year 1981

Number of shared co-authors 0

Steven A Benner

Foundation for Applied Molecular Evolution

Career Start Year 1980

Number of shared co-authors 0

Shigeyuki Yokoyama

Shinshu University School of Medicine

Career Start Year 1979

Number of shared co-authors 8

John A Tainer

The University of Texas MD Anderson Cancer Center

Career Start Year 1975

Number of shared co-authors 3

row(s) 1 - 30 of 30

James E Longbotham

University of California San Francisco

Co-authored papers 6

Alma L Burlingame

Department of Pharmaceutical Chemistry, University of California san francisco

Co-authored papers 5

James S Fraser

University of California san francisco

Co-authored papers 4

Michael J Trnka

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 4

Fatima S Ugur

University of California San Francisco

Co-authored papers 3

Melanie Ott

Gladstone Institute of Virology

Co-authored papers 3

Brian K Shoichet

Department of Pharmaceutical Chemistry, University of California san francisco

Co-authored papers 3

Iris D Young

University of California san francisco

Co-authored papers 3

Mark J S Kelly

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 2

Stephen N Floor

University of California san francisco

Co-authored papers 2

Kris M White

Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)

Co-authored papers 2

Adam Frost

University of California San Francisco

Co-authored papers 2

Nevan J Krogan (CM4AI)

University of California San Francisco

Co-authored papers 2

Philip J Robinson

College of Medical Veterinary and Life Sciences, University of Glasgow

Co-authored papers 1

Milan Mrksich

Northwestern University

Co-authored papers 1

Srivats Venkataramanan

Management and Science University

Co-authored papers 1

Hannes Braberg

University of California San Francisco

Co-authored papers 1

Yiming Cai

Institute of Mental Health and Woodbridge Hospital

Co-authored papers 1

Rahul K Suryawanshi

Gladstone Institutes

Co-authored papers 1

Alan D Frankel

University of California san francisco

Co-authored papers 1

Andrej Sali (CM4AI)

University of California San Francisco

Co-authored papers 1

Michael T Boyne

Co-authored papers 1

Eric Verdin

Buck Institute for Research on Aging

Co-authored papers 1

Robert J Nichols

Stanford University

Co-authored papers 1

Davide Ruggero

University of California San Francisco

Co-authored papers 1

Ying Shi

Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences

Co-authored papers 1

Phillip P Sharp

University of California san francisco

Co-authored papers 1

David A Agard

University of California, USA Quantitative Biosciences Institute (QBI) san francisco

Co-authored papers 1

Brian D Strahl

University of North Carolina

Co-authored papers 1

Jiewei Xu

Quantitative Biosciences Institute (QBI), University of California san francisco

Co-authored papers 1

1 - 30

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