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Author Details

Zhaohui S Qin
Emory University
2002
142
44
PMIDPaper TitleJournal TitlePublished Year
37391269Obesity during preclinical Alzheimer's disease development exacerbates brain metabolic decline.J Neurochem2024
36760203Identification of androgen response-related lncRNAs in prostate cancer.Prostate2023
37562656Role of TET1-mediated epigenetic modulation in Alzheimer's disease.Neurobiol Dis2023
36945653Dysregulation of Prefrontal Oligodendrocyte Lineage Cells Across Mouse Models of Adversity and Human Major Depressive Disorder <i>Oligodendrocyte dysregulation in mouse models of stress and MDD</i>.bioRxiv2023
37370794Unsupervised Hierarchical Clustering of Head and Neck Cancer Patients by Pre-Treatment Plasma Metabolomics Creates Prognostic Metabolic Subtypes.Cancers (Basel)2023
36923821Editorial: AI and data science in drug development and public health: Highlights from the MCBIOS 2022 conference.Front Big Data2023
36880172ResNetKhib: a novel cell type-specific tool for predicting lysine 2-hydroxyisobutylation sites via transfer learning.Brief Bioinform2023
36805914Circadian rhythm sleep disorders and time-of-day-dependent memory deficiency in Presenilin1/2 conditional knockout mice with long noncoding RNA expression profiling changes.Sleep Med2023
34643213Disease category-specific annotation of variants using an ensemble learning framework.Brief Bioinform2022
35617426Identification of <i>PSMB5</i> as a genetic modifier of fragile X-associated tremor/ataxia syndrome.Proc Natl Acad Sci U S A2022
35503780A neutralizing antibody target in early HIV-1 infection was recapitulated in rhesus macaques immunized with the transmitted/founder envelope sequence.PLoS Pathog2022
35517497Extensive Chromatin Structure-Function Associations Revealed by Accurate 3D Compartmentalization Characterization.Front Cell Dev Biol2022
36582986Comprehensive 100-bp resolution genome-wide epigenomic profiling data for the hg38 human reference genome.Data Brief2022
36575445NetAct: a computational platform to construct core transcription factor regulatory networks using gene activity.Genome Biol2022
35867800A clade C HIV-1 vaccine protects against heterologous SHIV infection by modulating IgG glycosylation and T helper response in macaques.Sci Immunol2022
35013217Single-cell chromatin accessibility landscape in kidney identifies additional cell-of-origin in heterogenous papillary renal cell carcinoma.Nat Commun2022
35093151ATAD3A mediates activation of RAS-independent mitochondrial ERK1/2 signaling, favoring head and neck cancer development.J Exp Clin Cancer Res2022
35145393Multiomics Analysis of Structural Magnetic Resonance Imaging of the Brain and Cerebrospinal Fluid Metabolomics in Cognitively Normal and Impaired Adults.Front Aging Neurosci2022
35272348LRcell: detecting the source of differential expression at the sub-cell-type level from bulk RNA-seq data.Brief Bioinform2022
35261801The novel BET degrader, QCA570, is highly active against the growth of human NSCLC cells and synergizes with osimertinib in suppressing osimertinib-resistant EGFR-mutant NSCLC cells.Am J Cancer Res2022
35078134UALCAN: An update to the integrated cancer data analysis platform.Neoplasia2022
34083716Glucocorticoid receptor wields chromatin interactions to tune transcription for cytoskeleton stabilization in podocytes.Commun Biol2021
33771836Super-Enhancer-Associated Transcription Factors Maintain Transcriptional Regulation in Mature Podocytes.J Am Soc Nephrol2021
33558677Adolescent stress sensitizes the adult neuroimmune transcriptome and leads to sex-specific microglial and behavioral phenotypes.Neuropsychopharmacology2021
34671755Pan-cancer analysis of pathway-based gene expression pattern at the individual level reveals biomarkers of clinical prognosis.Cell Rep Methods2021
34376485Plasma Metabolic Phenotypes of HPV-Associated versus Smoking-Associated Head and Neck Cancer and Patient Survival.Cancer Epidemiol Biomarkers Prev2021
34805976Systematic Exploration in Tissue-Pathway Associations of Complex Traits Using Comprehensive eQTLs Catalog.Front Big Data2021
34567058Systematic Evaluation of DNA Sequence Variations on <i>in vivo</i> Transcription Factor Binding Affinity.Front Genet2021
34294691A machine learning approach to brain epigenetic analysis reveals kinases associated with Alzheimer's disease.Nat Commun2021
30462144A comprehensive review of computational prediction of genome-wide features.Brief Bioinform2020
33575620An empirical bayesian approach for testing gene expression fold change and its application in detecting global dosage effects.NAR Genom Bioinform2020
32029588Lack of RAN-mediated toxicity in Huntington's disease knock-in mice.Proc Natl Acad Sci U S A2020
31899481Application of topic models to a compendium of ChIP-Seq datasets uncovers recurrent transcriptional regulatory modules.Bioinformatics2020
33214567Author Correction: Truncation of mutant huntingtin in knock-in mice demonstrates exon1 huntingtin is a key pathogenic form.Nat Commun2020
32631224Proceedings of the 2019 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.BMC Bioinformatics2020
32986729Signatures of somatic mutations and gene expression from p16INK4A positive head and neck squamous cell carcinomas (HNSCC).PLoS One2020
32547592DeconPeaker, a Deconvolution Model to Identify Cell Types Based on Chromatin Accessibility in ATAC-Seq Data of Mixture Samples.Front Genet2020
30113897Inferring Spatial Organization of Individual Topologically Associated Domains via Piecewise Helical Model.IEEE/ACM Trans Comput Biol Bioinform2020
31504167Regulatory annotation of genomic intervals based on tissue-specific expression QTLs.Bioinformatics2020
30475980RT States: systematic annotation of the human genome using cell type-specific replication timing programs.Bioinformatics2019
31608126An Integrated System Biology Approach Yields Drug Repositioning Candidates for the Treatment of Heart Failure.Front Genet2019
31177910Integrative characterization of G-Quadruplexes in the three-dimensional chromatin structure.Epigenetics2019
31231024Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment.Stem Cell Reports2019
29762754Optimized distributed systems achieve significant performance improvement on sorted merging of massive VCF files.Gigascience2018
29898995EWS/ETS-Driven Ewing Sarcoma Requires BET Bromodomain Proteins.Cancer Res2018
29688379Probabilistic and machine learning-based retrieval approaches for biomedical dataset retrieval.Database (Oxford)2018
27866206Genome-Wide STAT3 Binding Analysis after Histone Deacetylase Inhibition Reveals Novel Target Genes in Dendritic Cells.J Innate Immun2017
28173752An approach of identifying differential nucleosome regions in multiple samples.BMC Genomics2017
28224496Computationally Tractable Multivariate HMM in Genome-Wide Mapping Studies.Methods Mol Biol2017
28429804Identifying tagging SNPs for African specific genetic variation from the African Diaspora Genome.Sci Rep2017
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Collaborators

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Co-authored papers 11
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Co-authored papers 8
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Zhongnan University of Economics and Laws
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Co-authored papers 4
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Washington University in St Louis
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Clinical Biomarkers Laboratory, Emory University
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Wayne State University
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Vattikuti Urology Institute
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UCSF Medical Center-Mount Zion
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University of Chicago
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Jonathan Marchini
Regeneron Pharmaceuticals Inc
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Nick Patterson
Harvard University
Co-authored papers 3
Michael E Zwick
Rutgers University-New Brunswick, Rutgers University
Co-authored papers 3
Robert J Lonigro
Michigan Center for Translational Pathology, University of Michigan ann arbor
Co-authored papers 3
Jianjun Yu
Co-authored papers 3
Peter Donnelly
University of Oxford
Co-authored papers 3
Tianhua Niu
Co-authored papers 3
Shin Lin
University of Washington School of Medicine
Co-authored papers 3
Heather M Munro
Vanderbilt University Medical Center
Co-authored papers 3
Kathleen C Barnes
Co-authored papers 3
Yangfan Liu
Co-authored papers 2
Lawrence H Boise
Winship Cancer Institute, Emory University
Co-authored papers 2
Release 1.2