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Author Details

Feichen Shen
Shanghai Polytechnic University
2012
52
15
PMIDPaper TitleJournal TitlePublished Year
35575782Advances of Drugs Electroanalysis Based on Direct Electrochemical Redox on Electrodes: A Review.Crit Rev Anal Chem2024
35907849PO2RDF: representation of real-world data for precision oncology using resource description framework.BMC Med Genomics2022
35673010POKR: Building a Computable Heterogeneous Knowledge Resource for Precision Oncology.Stud Health Technol Inform2022
33321199An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses.J Biomed Inform2021
33502329Family History Extraction From Synthetic Clinical Narratives Using Natural Language Processing: Overview and Evaluation of a Challenge Data Set and Solutions for the 2019 National NLP Clinical Challenges (n2c2)/Open Health Natural Language Processing (OHNLP) Competition.JMIR Med Inform2021
33836575Long-read assembly of a Great Dane genome highlights the contribution of GC-rich sequence and mobile elements to canine genomes.Proc Natl Acad Sci U S A2021
34401908Corrigendum to: The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records.J Am Med Inform Assoc2021
32458963Constructing co-occurrence network embeddings to assist association extraction for COVID-19 and other coronavirus infectious diseases.J Am Med Inform Assoc2020
32013076Rapid, Paralog-Sensitive CNV Analysis of 2457 Human Genomes Using QuicK-mer2.Genes (Basel)2020
33245291The 2019 n2c2/OHNLP Track on Clinical Semantic Textual Similarity: Overview.JMIR Med Inform2020
32577704An Aberration Detection-Based Approach for Sentinel Syndromic Surveillance of COVID-19 and Other Novel Influenza-Like Illnesses.medRxiv2020
32885823Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity.J Am Med Inform Assoc2020
32968800The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records.J Am Med Inform Assoc2020
32768446Clinical concept extraction: A methodology review.J Biomed Inform2020
33021486Implementation of a Cohort Retrieval System for Clinical Data Repositories Using the Observational Medical Outcomes Partnership Common Data Model: Proof-of-Concept System Validation.JMIR Med Inform2020
32477695Data-driven Sublanguage Analysis for Cancer Genomics Knowledge Modeling: Applications in Mining Oncological Genetics Information from Patients' Genetic Reports.AMIA Jt Summits Transl Sci Proc2020
30616584A clinical text classification paradigm using weak supervision and deep representation.BMC Med Inform Decis Mak2019
35415424Special Issue on Healthcare Knowledge Discovery and Management.J Healthc Inform Res2019
31728432Detection of Surgical Site Infection Utilizing Automated Feature Generation in Clinical Notes.J Healthc Inform Res2019
32025655Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data.JAMIA Open2019
31655273Ensembles of natural language processing systems for portable phenotyping solutions.J Biomed Inform2019
31821152Detecting Lifestyle Risk Factors for Chronic Kidney Disease With Comorbidities: Association Rule Mining Analysis of Web-Based Survey Data.J Med Internet Res2019
31259028Evaluating the Impact of Dictionary Updates on Automatic Annotations Based on Clinical NLP Systems.AMIA Jt Summits Transl Sci Proc2019
31598581An Interactive Visualization Tool for HL7 FHIR Specification Browsing and Profiling.J Healthc Inform Res2019
31255713HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology.J Biomed Inform2019
30943957Discovering associations between problem list and practice setting.BMC Med Inform Decis Mak2019
30764825Rare disease knowledge enrichment through a data-driven approach.BMC Med Inform Decis Mak2019
29162496Clinical information extraction applications: A literature review.J Biomed Inform2018
30217670A comparison of word embeddings for the biomedical natural language processing.J Biomed Inform2018
30131701Detecting Pharmacovigilance Signals Combining Electronic Medical Records With Spontaneous Reports: A Case Study of Conventional Disease-Modifying Antirheumatic Drugs for Rheumatoid Arthritis.Front Pharmacol2018
29888045Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data.AMIA Jt Summits Transl Sci Proc2018
29961570Deep Phenotyping on Electronic Health Records Facilitates Genetic Diagnosis by Clinical Exomes.Am J Hum Genet2018
29854225Leveraging Collaborative Filtering to Accelerate Rare Disease Diagnosis.AMIA Annu Symp Proc2018
29854206Mining Hierarchies and Similarity Clusters from Value Set Repositories.AMIA Annu Symp Proc2018
29950181Comparison of village dog and wolf genomes highlights the role of the neural crest in dog domestication.BMC Biol2018
30815196Incorporating Knowledge-Driven Insights into a Collaborative Filtering Model to Facilitate the Differential Diagnosis of Rare Diseases.AMIA Annu Symp Proc2018
30295724Extracting chemical-protein relations using attention-based neural networks.Database (Oxford)2018
30305261Utilization of Electronic Medical Records and Biomedical Literature to Support the Diagnosis of Rare Diseases Using Data Fusion and Collaborative Filtering Approaches.JMIR Med Inform2018
29373609Systematic identification of latent disease-gene associations from PubMed articles.PLoS One2018
28815117Systematic Analysis of Free-Text Family History in Electronic Health Record.AMIA Jt Summits Transl Sci Proc2017
29038097Recommending Education Materials for Diabetic Questions Using Information Retrieval Approaches.J Med Internet Res2017
29132635Need of informatics in designing interoperable clinical registries.Int J Med Inform2017
29295370Using Human Phenotype Ontology for Phenotypic Analysis of Clinical Notes.Stud Health Technol Inform2017
29295162Phenotypic Analysis of Clinical Narratives Using Human Phenotype Ontology.Stud Health Technol Inform2017
28815152Populating Physician Biographical Pages Based on EMR Data.AMIA Jt Summits Transl Sci Proc2017
27548262Knowledge Discovery from Biomedical Ontologies in Cross Domains.PLoS One2016
28983419Predicate Oriented Pattern Analysis for Biomedical Knowledge Discovery.Intell Inf Manag2016
29071308A Text-Mining Framework for Supporting Systematic Reviews.Am J Inf Manag2016
27358426Y-Chromosome Structural Diversity in the Bonobo and Chimpanzee Lineages.Genome Biol Evol2016
24297544Exploring the pharmacogenomics knowledge base (PharmGKB) for repositioning breast cancer drugs by leveraging Web ontology language (OWL) and cheminformatics approaches.Pac Symp Biocomput2014
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Kevin J Peterson
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Carol Friedman
Columbia University
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