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Author Details

Craig D Wenger
University of Wisconsin
2007
29
24
Leah V Schaffer (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35134826Plotgardener: cultivating precise multi-panel figures in R.Bioinformatics2022
31903447Bedtoolsr: An R package for genomic data analysis and manipulation.J Open Source Softw2019
28248113Global Post-Translational Modification Discovery.J Proteome Res2017
26418581Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search.J Proteome Res2015
23323968A proteomics search algorithm specifically designed for high-resolution tandem mass spectra.J Proteome Res2013
23882030Amine-reactive neutron-encoded labels for highly plexed proteomic quantitation.Mol Cell Proteomics2013
23493562RNA-protein analysis using a conditional CRISPR nuclease.Proc Natl Acad Sci U S A2013
22290482Characterizing peptide neutral losses induced by negative electron-transfer dissociation (NETD).J Am Soc Mass Spectrom2012
22586074Instant spectral assignment for advanced decision tree-driven mass spectrometry.Proc Natl Acad Sci U S A2012
21472585Characterization and diagnostic value of amino acid side chain neutral losses following electron-transfer dissociation.J Am Soc Mass Spectrom2011
21772262A dynamic model of proteome changes reveals new roles for transcript alteration in yeast.Mol Syst Biol2011
21963608Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging.Nat Methods2011
21983960Proteomic and phosphoproteomic comparison of human ES and iPS cells.Nat Methods2011
21298793COMPASS: a suite of pre- and post-search proteomics software tools for OMSSA.Proteomics2011
20047291Phosphoproteomics for the masses.ACS Chem Biol2010
20941771Intellinsity: a tool for visualization and analysis of liquid chromatography/tandem mass spectrometry sampling events.Rapid Commun Mass Spectrom2010
20124352Sub-part-per-million precursor and product mass accuracy for high-throughput proteomics on an electron transfer dissociation-enabled orbitrap mass spectrometer.Mol Cell Proteomics2010
20113005Value of using multiple proteases for large-scale mass spectrometry-based proteomics.J Proteome Res2010
19899080The effect of interfering ions on search algorithm performance for electron-transfer dissociation data.Proteomics2010
19923235Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes.Plant Physiol2010
19938823Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification.Anal Chem2010
19053528Tandem mass spectrometry with ultrahigh mass accuracy clarifies peptide identification by database retrieval.J Proteome Res2009
19577935Top-down proteomics reveals novel protein forms expressed in Methanosarcina acetivorans.J Am Soc Mass Spectrom2009
19362853Post-acquisition ETD spectral processing for increased peptide identifications.J Am Soc Mass Spectrom2009
19144917Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry.Proc Natl Acad Sci U S A2009
18184016Global amine and acid functional group modification of proteins.Anal Chem2008
18841935Versatile online-offline engine for automated acquisition of high-resolution tandem mass spectra.Anal Chem2008
18029500Characterization of proteomic and metabolomic responses to dietary factors and supplements.J Nutr2007
17915963Top-down proteomics on a chromatographic time scale using linear ion trap fourier transform hybrid mass spectrometers.Anal Chem2007
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Collaborators

Douglas H Phanstiel
University of North Carolina at Chapel Hill
Co-authored papers 6
Neil L Kelleher
Northwestern University
Co-authored papers 6
Danielle L Swaney
J. David Gladstone Institutes
Co-authored papers 5
Michael T Boyne
Co-authored papers 3
James A Thomson
Co-authored papers 3
Mark Scalf
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 2
Michael R Shortreed
University of Wisconsin-Madison
Co-authored papers 2
Brian L Frey
University of Wisconsin-Madison, 1101 University Ave
Co-authored papers 2
Lloyd M Smith
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 2
Lihua Jiang
Stanford University
Co-authored papers 1
Scott Topper
Invitae Corporation
Co-authored papers 1
Pengzhi Yu
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Qiyao Li
The Second Hospital of Hebei Medical University
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Victor Ruotti
Co-authored papers 1
Benjamin A Garcia
University of Pennsylvania
Co-authored papers 1
Gloria M Sheynkman (CM4AI)
University of Virginia
Co-authored papers 1
Michael I Love
University of North Carolina at Chapel Hill
Co-authored papers 1
Shulan Tian
Co-authored papers 1
Paul M Thomas
Northwestern University
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Audrey P Gasch
University of Wisconsin-Madison
Co-authored papers 1
Leah V Schaffer (CM4AI)
University of California San Diego
Co-authored papers 1
Ron Stewart
Co-authored papers 1
Jennifer A Doudna
Innovative Genomics Institute, University of California berkeley
Co-authored papers 1
David J Pagliarini
Washington University School of Medicine
Co-authored papers 1
Donald F Hunt
University of Virginia
Co-authored papers 1
Release 1.2