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Author Details

David Jimenez-Morales
J. David Gladstone Institutes
2008
32
17
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36603024Nuclear accumulation of host transcripts during Zika Virus Infection.PLoS Pathog2023
37577546Cross-family small GTPase ubiquitination by the intracellular pathogen <i>Legionella pneumophila</i>.bioRxiv2023
37019383Quantitative Proteomic Analysis Reveals apoE4-Dependent Phosphorylation of the Actin-Regulating Protein VASP.Mol Cell Proteomics2023
36778330Sexual dimorphism and the multi-omic response to exercise training in rat subcutaneous white adipose tissue.bioRxiv2023
36711881The mitochondrial multi-omic response to exercise training across tissues.bioRxiv2023
35073755Ceragenins and Antimicrobial Peptides Kill Bacteria through Distinct Mechanisms.mBio2022
36107481Murine blastocysts generated by in vitro fertilization show increased Warburg metabolism and altered lactate production.Elife2022
36042219Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy.Nat Commun2022
34166681Endosomal cAMP production broadly impacts the cellular phosphoproteome.J Biol Chem2021
34556855Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy.Nat Microbiol2021
34551310Brown adipocyte ATF4 activation improves thermoregulation and systemic metabolism.Cell Rep2021
34802252Mono- and Biallelic Protein-Truncating Variants in Alpha-Actinin 2 Cause Cardiomyopathy Through Distinct Mechanisms.Circ Genom Precis Med2021
34591642A protein network map of head and neck cancer reveals PIK3CA mutant drug sensitivity.Science2021
34128959Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19.J Exp Med2021
32766602High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs.medRxiv2020
31951200Dynamic post-translational modification profiling of <i>Mycobacterium tuberculosis</i>-infected primary macrophages.Elife2020
30508698Proteasome lid bridges mitochondrial stress with Cdc53/Cullin1 NEDDylation status.Redox Biol2019
31540829Systematic Identification of Host Cell Regulators of Legionella pneumophila Pathogenesis Using a Genome-wide CRISPR Screen.Cell Host Microbe2019
30883359Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function.J Alzheimers Dis2019
29514069Proteome Imbalance of Mitochondrial Electron Transport Chain in Brown Adipocytes Leads to Metabolic Benefits.Cell Metab2018
30077634Quantitative Yeast Genetic Interaction Profiling of Bacterial Effector Proteins Uncovers a Role for the Human Retromer in Salmonella Infection.Cell Syst2018
30177761Influenza virus infection causes global RNAPII termination defects.Nat Struct Mol Biol2018
30030465Sympathetic inputs regulate adaptive thermogenesis in brown adipose tissue through cAMP-Salt inducible kinase axis.Sci Rep2018
30401782The Cellular NMD Pathway Restricts Zika Virus Infection and Is Targeted by the Viral Capsid Protein.mBio2018
28475896The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity.Cell2017
26088819dictyBase 2015: Expanding data and annotations in a new software environment.Genesis2015
24419378Lysine carboxylation: unveiling a spontaneous post-translational modification.Acta Crystallogr D Biol Crystallogr2014
22051023Computational studies of membrane proteins: models and predictions for biological understanding.Biochim Biophys Acta2012
22484856Ionizable side chains at catalytic active sites of enzymes.Eur Biophys J2012
22391420Engineered oligomerization state of OmpF protein through computational design decouples oligomer dissociation from unfolding.J Mol Biol2012
22069449Pattern of amino acid substitutions in transmembrane domains of β-barrel membrane proteins for detecting remote homologs in bacteria and mitochondria.PLoS One2011
19162917Detecting remote homologues using scoring matrices calculated from the estimation of amino acid substitution rates of beta-barrel membrane proteins.Annu Int Conf IEEE Eng Med Biol Soc2008
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Collaborators

Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 17
Danielle L Swaney
J. David Gladstone Institutes
Co-authored papers 10
Euan A Ashley
Stanford University
Co-authored papers 5
Jeffrey R Johnson
Gladstone Institutes
Co-authored papers 5
Matthew T Wheeler
Stanford University School of Medicine
Co-authored papers 4
Randy A Albrecht
Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Billy W Newton
University of California San Francisco
Co-authored papers 3
Esther Paulo
Cardiovascular Research Institute, University of California at San Francisco
Co-authored papers 3
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 3
Adolfo Garc??a-Sastre
Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Michael J McGregor
J. David Gladstone Institutes
Co-authored papers 3
Margaret Soucheray
J. David Gladstone Institutes
Co-authored papers 3
Judd F Hultquist
Northwestern University Feinberg School of Medicine
Co-authored papers 3
Malene E Lindholm
Co-authored papers 3
Biao Wang
Cardiovascular Research Institute, University of California at San Francisco
Co-authored papers 3
Thong T Nguyen
Gladstone Institute of Virology
Co-authored papers 2
Nicole R Gay
Co-authored papers 2
Gary P Schroth
Co-authored papers 2
Kelsey M Haas
J. David Gladstone Institutes
Co-authored papers 2
Julia A Kaye
J. David Gladstone Institutes
Co-authored papers 2
Ruchi Masand
Cardiovascular Research Institute, University of California san francisco
Co-authored papers 2
Sakshi Tomar
J. David Gladstone Institutes
Co-authored papers 2
Alexander Rialdi
Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Victoria N Parikh
Stanford University
Co-authored papers 2
Andra L Blomkalns
Stanford University
Co-authored papers 2
Dexter Pratt (CM4AI)
UC San Diego
Co-authored papers 2
Natasha Moshkina
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Ivan Marazzi
Center for Epigenetics and Metabolism, University of California irvine
Co-authored papers 2
Krystal A Fontaine
J. David Gladstone Institutes
Co-authored papers 2
Carlos D Bustamante
Stanford University
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